261 related articles for article (PubMed ID: 22974051)
21. Adaptive Smith-Waterman residue match seeding for protein structural alignment.
Topham CM; Rouquier M; Tarrat N; André I
Proteins; 2013 Oct; 81(10):1823-39. PubMed ID: 23720362
[TBL] [Abstract][Full Text] [Related]
22. Supervised protein family classification and new family construction.
Yi G; Thon MR; Sze SH
J Comput Biol; 2012 Aug; 19(8):957-67. PubMed ID: 22876787
[TBL] [Abstract][Full Text] [Related]
23. Comprehensive assessment of automatic structural alignment against a manual standard, the scop classification of proteins.
Gerstein M; Levitt M
Protein Sci; 1998 Feb; 7(2):445-56. PubMed ID: 9521122
[TBL] [Abstract][Full Text] [Related]
24. Clustering protein sequences--structure prediction by transitive homology.
Bolten E; Schliep A; Schneckener S; Schomburg D; Schrader R
Bioinformatics; 2001 Oct; 17(10):935-41. PubMed ID: 11673238
[TBL] [Abstract][Full Text] [Related]
25. Consistency matrices: quantified structure alignments for sets of related proteins.
Van Walle I; Lasters I; Wyns L
Proteins; 2003 Apr; 51(1):1-9. PubMed ID: 12596259
[TBL] [Abstract][Full Text] [Related]
26. Use of a database of structural alignments and phylogenetic trees in investigating the relationship between sequence and structural variability among homologous proteins.
Balaji S; Srinivasan N
Protein Eng; 2001 Apr; 14(4):219-26. PubMed ID: 11391013
[TBL] [Abstract][Full Text] [Related]
27. Automatic classification of protein structures using low-dimensional structure space mappings.
Asarnow D; Singh R
BMC Bioinformatics; 2014; 15 Suppl 2(Suppl 2):S1. PubMed ID: 24564500
[TBL] [Abstract][Full Text] [Related]
28. FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.
Ausiello G; Gherardini PF; Marcatili P; Tramontano A; Via A; Helmer-Citterich M
BMC Bioinformatics; 2008 Mar; 9 Suppl 2(Suppl 2):S2. PubMed ID: 18387204
[TBL] [Abstract][Full Text] [Related]
29. A framework for protein structure classification and identification of novel protein structures.
Kim YJ; Patel JM
BMC Bioinformatics; 2006 Oct; 7():456. PubMed ID: 17042958
[TBL] [Abstract][Full Text] [Related]
30. MASS: multiple structural alignment by secondary structures.
Dror O; Benyamini H; Nussinov R; Wolfson H
Bioinformatics; 2003; 19 Suppl 1():i95-104. PubMed ID: 12855444
[TBL] [Abstract][Full Text] [Related]
31. SEGA: semiglobal graph alignment for structure-based protein comparison.
Mernberger M; Klebe G; Hüllermeier E
IEEE/ACM Trans Comput Biol Bioinform; 2011; 8(5):1330-43. PubMed ID: 21339532
[TBL] [Abstract][Full Text] [Related]
32. CLANS: a Java application for visualizing protein families based on pairwise similarity.
Frickey T; Lupas A
Bioinformatics; 2004 Dec; 20(18):3702-4. PubMed ID: 15284097
[TBL] [Abstract][Full Text] [Related]
33. STRALCP--structure alignment-based clustering of proteins.
Zemla A; Geisbrecht B; Smith J; Lam M; Kirkpatrick B; Wagner M; Slezak T; Zhou CE
Nucleic Acids Res; 2007; 35(22):e150. PubMed ID: 18039711
[TBL] [Abstract][Full Text] [Related]
34. An alternative view of protein fold space.
Shindyalov IN; Bourne PE
Proteins; 2000 Feb; 38(3):247-60. PubMed ID: 10713986
[TBL] [Abstract][Full Text] [Related]
35. Compression-based classification of biological sequences and structures via the Universal Similarity Metric: experimental assessment.
Ferragina P; Giancarlo R; Greco V; Manzini G; Valiente G
BMC Bioinformatics; 2007 Jul; 8():252. PubMed ID: 17629909
[TBL] [Abstract][Full Text] [Related]
36. Evaluation of BLAST-based edge-weighting metrics used for homology inference with the Markov Clustering algorithm.
Gibbons TR; Mount SM; Cooper ED; Delwiche CF
BMC Bioinformatics; 2015 Jul; 16():218. PubMed ID: 26160651
[TBL] [Abstract][Full Text] [Related]
37. Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites.
Najmanovich R; Kurbatova N; Thornton J
Bioinformatics; 2008 Aug; 24(16):i105-11. PubMed ID: 18689810
[TBL] [Abstract][Full Text] [Related]
38. A fast hierarchical clustering algorithm for large-scale protein sequence data sets.
Szilágyi SM; Szilágyi L
Comput Biol Med; 2014 May; 48():94-101. PubMed ID: 24657908
[TBL] [Abstract][Full Text] [Related]
39. ROC and confusion analysis of structure comparison methods identify the main causes of divergence from manual protein classification.
Sam V; Tai CH; Garnier J; Gibrat JF; Lee B; Munson PJ
BMC Bioinformatics; 2006 Apr; 7():206. PubMed ID: 16613604
[TBL] [Abstract][Full Text] [Related]
40. A segment alignment approach to protein comparison.
Ye Y; Jaroszewski L; Li W; Godzik A
Bioinformatics; 2003 Apr; 19(6):742-9. PubMed ID: 12691986
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]