These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

307 related articles for article (PubMed ID: 22988065)

  • 1. Statistical inference of the generation probability of T-cell receptors from sequence repertoires.
    Murugan A; Mora T; Walczak AM; Callan CG
    Proc Natl Acad Sci U S A; 2012 Oct; 109(40):16161-6. PubMed ID: 22988065
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Inferring processes underlying B-cell repertoire diversity.
    Elhanati Y; Sethna Z; Marcou Q; Callan CG; Mora T; Walczak AM
    Philos Trans R Soc Lond B Biol Sci; 2015 Sep; 370(1676):. PubMed ID: 26194757
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Insights into immune system development and function from mouse T-cell repertoires.
    Sethna Z; Elhanati Y; Dudgeon CS; Callan CG; Levine AJ; Mora T; Walczak AM
    Proc Natl Acad Sci U S A; 2017 Feb; 114(9):2253-2258. PubMed ID: 28196891
    [TBL] [Abstract][Full Text] [Related]  

  • 4. repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data.
    Elhanati Y; Marcou Q; Mora T; Walczak AM
    Bioinformatics; 2016 Jul; 32(13):1943-51. PubMed ID: 27153709
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing.
    Freeman JD; Warren RL; Webb JR; Nelson BH; Holt RA
    Genome Res; 2009 Oct; 19(10):1817-24. PubMed ID: 19541912
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Quantifying selection in immune receptor repertoires.
    Elhanati Y; Murugan A; Callan CG; Mora T; Walczak AM
    Proc Natl Acad Sci U S A; 2014 Jul; 111(27):9875-80. PubMed ID: 24941953
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
    Alamyar E; Duroux P; Lefranc MP; Giudicelli V
    Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
    [TBL] [Abstract][Full Text] [Related]  

  • 8. T-cell receptor repertoires share a restricted set of public and abundant CDR3 sequences that are associated with self-related immunity.
    Madi A; Shifrut E; Reich-Zeliger S; Gal H; Best K; Ndifon W; Chain B; Cohen IR; Friedman N
    Genome Res; 2014 Oct; 24(10):1603-12. PubMed ID: 25024161
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Predicting the spectrum of TCR repertoire sharing with a data-driven model of recombination.
    Elhanati Y; Sethna Z; Callan CG; Mora T; Walczak AM
    Immunol Rev; 2018 Jul; 284(1):167-179. PubMed ID: 29944757
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assigning and visualizing germline genes in antibody repertoires.
    Frost SD; Murrell B; Hossain AS; Silverman GJ; Pond SL
    Philos Trans R Soc Lond B Biol Sci; 2015 Sep; 370(1676):. PubMed ID: 26194754
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Statistical inference reveals the role of length, GC content, and local sequence in V(D)J nucleotide trimming.
    Russell ML; Simon N; Bradley P; Matsen FA
    Elife; 2023 May; 12():. PubMed ID: 37227256
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Individual heritable differences result in unique cell lymphocyte receptor repertoires of naïve and antigen-experienced cells.
    Rubelt F; Bolen CR; McGuire HM; Vander Heiden JA; Gadala-Maria D; Levin M; Euskirchen GM; Mamedov MR; Swan GE; Dekker CL; Cowell LG; Kleinstein SH; Davis MM
    Nat Commun; 2016 Mar; 7():11112. PubMed ID: 27005435
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rearranged T Cell Receptor Sequences in the Germline Genome of Channel Catfish Are Preferentially Expressed in Response to Infection.
    Findly RC; Niagro FD; Sweeney RP; Camus AC; Dickerson HW
    Front Immunol; 2018; 9():2117. PubMed ID: 30319607
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Population variability in the generation and selection of T-cell repertoires.
    Sethna Z; Isacchini G; Dupic T; Mora T; Walczak AM; Elhanati Y
    PLoS Comput Biol; 2020 Dec; 16(12):e1008394. PubMed ID: 33296360
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Combining mutation and recombination statistics to infer clonal families in antibody repertoires.
    Spisak N; Athènes G; Dupic T; Mora T; Walczak AM
    Elife; 2024 Aug; 13():. PubMed ID: 39120133
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Bayesian optimist's guide to adaptive immune receptor repertoire analysis.
    Olson BJ; Matsen FA
    Immunol Rev; 2018 Jul; 284(1):148-166. PubMed ID: 29944760
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Non-productive human TCR beta chain genes represent V-D-J diversity before selection upon function: insight into biased usage of TCRBD and TCRBJ genes and diversity of CDR3 region length.
    Manfras BJ; Terjung D; Boehm BO
    Hum Immunol; 1999 Nov; 60(11):1090-100. PubMed ID: 10600007
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Inter- and intraspecies comparison of phylogenetic fingerprints and sequence diversity of immunoglobulin variable genes.
    Yermanos A; Dounas A; Greiff V; Stadler T; Oxenius A; Reddy ST
    Immunogenetics; 2020 Jul; 72(5):279-294. PubMed ID: 32367185
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CDR3 and V genes show distinct reconstitution patterns in T cell repertoire post-allogeneic bone marrow transplantation.
    Tickotsky-Moskovitz N; Louzoun Y; Dvorkin S; Rotkopf A; Kuperman AA; Efroni S
    Immunogenetics; 2021 Apr; 73(2):163-173. PubMed ID: 33475766
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The Repertoire Dissimilarity Index as a method to compare lymphocyte receptor repertoires.
    Bolen CR; Rubelt F; Vander Heiden JA; Davis MM
    BMC Bioinformatics; 2017 Mar; 18(1):155. PubMed ID: 28264647
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 16.