264 related articles for article (PubMed ID: 22993180)
1. Universal amplification, next-generation sequencing, and assembly of HIV-1 genomes.
Gall A; Ferns B; Morris C; Watson S; Cotten M; Robinson M; Berry N; Pillay D; Kellam P
J Clin Microbiol; 2012 Dec; 50(12):3838-44. PubMed ID: 22993180
[TBL] [Abstract][Full Text] [Related]
2. Sensitive Next-Generation Sequencing Method Reveals Deep Genetic Diversity of HIV-1 in the Democratic Republic of the Congo.
Rodgers MA; Wilkinson E; Vallari A; McArthur C; Sthreshley L; Brennan CA; Cloherty G; de Oliveira T
J Virol; 2017 Mar; 91(6):. PubMed ID: 28077647
[TBL] [Abstract][Full Text] [Related]
3. Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.
Boltz VF; Rausch J; Shao W; Hattori J; Luke B; Maldarelli F; Mellors JW; Kearney MF; Coffin JM
Retrovirology; 2016 Dec; 13(1):87. PubMed ID: 27998286
[TBL] [Abstract][Full Text] [Related]
4. Multiplexed next-generation sequencing and de novo assembly to obtain near full-length HIV-1 genome from plasma virus.
Aralaguppe SG; Siddik AB; Manickam A; Ambikan AT; Kumar MM; Fernandes SJ; Amogne W; Bangaruswamy DK; Hanna LE; Sonnerborg A; Neogi U
J Virol Methods; 2016 Oct; 236():98-104. PubMed ID: 27448822
[TBL] [Abstract][Full Text] [Related]
5. Development of a Versatile, Near Full Genome Amplification and Sequencing Approach for a Broad Variety of HIV-1 Group M Variants.
Banin AN; Tuen M; Bimela JS; Tongo M; Zappile P; Khodadadi-Jamayran A; Nanfack AJ; Meli J; Wang X; Mbanya D; Ngogang J; Heguy A; Nyambi PN; Fokunang C; Duerr R
Viruses; 2019 Apr; 11(4):. PubMed ID: 30939815
[TBL] [Abstract][Full Text] [Related]
6. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin.
Gao F; Robertson DL; Morrison SG; Hui H; Craig S; Decker J; Fultz PN; Girard M; Shaw GM; Hahn BH; Sharp PM
J Virol; 1996 Oct; 70(10):7013-29. PubMed ID: 8794346
[TBL] [Abstract][Full Text] [Related]
7. CODEHOP-Mediated PCR Improves HIV-1 Genotyping and Detection of Variants by MinION Sequencing.
Sarkhouh H; Chehadeh W
Microbiol Spectr; 2021 Oct; 9(2):e0143221. PubMed ID: 34668751
[TBL] [Abstract][Full Text] [Related]
8. Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing.
Hora B; Gulzar N; Chen Y; Karagiannis K; Cai F; Su C; Smith K; Simonyan V; Shah SA; Ahmed M; Sanchez AM; Stone M; Cohen MS; Denny TN; Mazumder R; Gao F
mSphere; 2020 Oct; 5(5):. PubMed ID: 33055255
[TBL] [Abstract][Full Text] [Related]
9. Long-Range HIV Genotyping Using Viral RNA and Proviral DNA for Analysis of HIV Drug Resistance and HIV Clustering.
Novitsky V; Zahralban-Steele M; McLane MF; Moyo S; van Widenfelt E; Gaseitsiwe S; Makhema J; Essex M
J Clin Microbiol; 2015 Aug; 53(8):2581-92. PubMed ID: 26041893
[TBL] [Abstract][Full Text] [Related]
10. From clinical sample to complete genome: Comparing methods for the extraction of HIV-1 RNA for high-throughput deep sequencing.
Cornelissen M; Gall A; Vink M; Zorgdrager F; Binter Š; Edwards S; Jurriaans S; Bakker M; Ong SH; Gras L; van Sighem A; Bezemer D; de Wolf F; Reiss P; Kellam P; Berkhout B; Fraser C; van der Kuyl AC;
Virus Res; 2017 Jul; 239():10-16. PubMed ID: 27497916
[TBL] [Abstract][Full Text] [Related]
11. Detection of distinct human immunodeficiency virus type 1 circulating recombinant forms in northeast Brazil.
Santos LA; Monteiro-Cunha JP; Araujo AF; Brites C; Galvao-Castro B; Alcantara LC
J Med Virol; 2011 Dec; 83(12):2066-72. PubMed ID: 22012712
[TBL] [Abstract][Full Text] [Related]
12. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing.
Salazar-Gonzalez JF; Bailes E; Pham KT; Salazar MG; Guffey MB; Keele BF; Derdeyn CA; Farmer P; Hunter E; Allen S; Manigart O; Mulenga J; Anderson JA; Swanstrom R; Haynes BF; Athreya GS; Korber BT; Sharp PM; Shaw GM; Hahn BH
J Virol; 2008 Apr; 82(8):3952-70. PubMed ID: 18256145
[TBL] [Abstract][Full Text] [Related]
13. Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma.
James KL; de Silva TI; Brown K; Whittle H; Taylor S; McVean G; Esbjörnsson J; Rowland-Jones SL
J Virol; 2019 Jan; 93(1):. PubMed ID: 30333167
[TBL] [Abstract][Full Text] [Related]
14. Amino Acid Prevalence of HIV-1
Tzou PL; Rhee SY; Shafer RW
AIDS Res Hum Retroviruses; 2019 Oct; 35(10):924-929. PubMed ID: 31317771
[TBL] [Abstract][Full Text] [Related]
15. Deep sequencing of HIV-1 near full-length proviral genomes identifies high rates of BF1 recombinants including two novel circulating recombinant forms (CRF) 70_BF1 and a disseminating 71_BF1 among blood donors in Pernambuco, Brazil.
Pessôa R; Watanabe JT; Calabria P; Felix AC; Loureiro P; Sabino EC; Busch MP; Sanabani SS;
PLoS One; 2014; 9(11):e112674. PubMed ID: 25401747
[TBL] [Abstract][Full Text] [Related]
16. Ultradeep sequencing of B and non-B HIV-1 subtypes: Viral diversity and drug resistance mutations before and after one month of antiretroviral therapy in naive patients.
Epaulard O; Signori-Schmuck A; Larrat S; Kulkarni O; Blum MG; Fusillier K; Blanc M; Leclercq P; François O; Morand P
J Clin Virol; 2017 Oct; 95():13-19. PubMed ID: 28830014
[TBL] [Abstract][Full Text] [Related]
17. The evolution of HIV-1 group M genetic variability in Southern Cameroon is characterized by several emerging recombinant forms of CRF02_AG and viruses with drug resistance mutations.
Agyingi L; Mayr LM; Kinge T; Orock GE; Ngai J; Asaah B; Mpoame M; Hewlett I; Nyambi P
J Med Virol; 2014 Mar; 86(3):385-93. PubMed ID: 24248638
[TBL] [Abstract][Full Text] [Related]
18. Prevalence and clinical impacts of HIV-1 intersubtype recombinants in Uganda revealed by near-full-genome population and deep sequencing approaches.
Lee GQ; Bangsberg DR; Mo T; Lachowski C; Brumme CJ; Zhang W; Lima VD; Boum Y; Mwebesa BB; Muzoora C; Andia I; Mbalibulha Y; Kembabazi A; Carroll R; Siedner MJ; Haberer JE; Mocello AR; Kigozi SH; Hunt PW; Martin JN; Harrigan PR
AIDS; 2017 Nov; 31(17):2345-2354. PubMed ID: 28832407
[TBL] [Abstract][Full Text] [Related]
19. HIV-1 genetic diversity in Russia: CRF63_02A1, a new HIV type 1 genetic variant spreading in Siberia.
Baryshev PB; Bogachev VV; Gashnikova NM
AIDS Res Hum Retroviruses; 2014 Jun; 30(6):592-7. PubMed ID: 24279614
[TBL] [Abstract][Full Text] [Related]
20. Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India.
Alampalli SV; Thomson MM; Sampathkumar R; Sivaraman K; U K J AJ; Dhar C; D Souza G; Berry N; Vyakarnam A
PLoS One; 2017; 12(12):e0188603. PubMed ID: 29220350
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]