219 related articles for article (PubMed ID: 22998634)
1. Molecular mechanism of preQ1 riboswitch action: a molecular dynamics study.
Banáš P; Sklenovský P; Wedekind JE; Šponer J; Otyepka M
J Phys Chem B; 2012 Oct; 116(42):12721-34. PubMed ID: 22998634
[TBL] [Abstract][Full Text] [Related]
2. Comparison of a preQ1 riboswitch aptamer in metabolite-bound and free states with implications for gene regulation.
Jenkins JL; Krucinska J; McCarty RM; Bandarian V; Wedekind JE
J Biol Chem; 2011 Jul; 286(28):24626-37. PubMed ID: 21592962
[TBL] [Abstract][Full Text] [Related]
3. Computational study of unfolding and regulation mechanism of preQ1 riboswitches.
Gong Z; Zhao Y; Chen C; Xiao Y
PLoS One; 2012; 7(9):e45239. PubMed ID: 23028870
[TBL] [Abstract][Full Text] [Related]
4. Structural analysis of a class III preQ1 riboswitch reveals an aptamer distant from a ribosome-binding site regulated by fast dynamics.
Liberman JA; Suddala KC; Aytenfisu A; Chan D; Belashov IA; Salim M; Mathews DH; Spitale RC; Walter NG; Wedekind JE
Proc Natl Acad Sci U S A; 2015 Jul; 112(27):E3485-94. PubMed ID: 26106162
[TBL] [Abstract][Full Text] [Related]
5. Comparison of solution and crystal structures of preQ1 riboswitch reveals calcium-induced changes in conformation and dynamics.
Zhang Q; Kang M; Peterson RD; Feigon J
J Am Chem Soc; 2011 Apr; 133(14):5190-3. PubMed ID: 21410253
[TBL] [Abstract][Full Text] [Related]
6. Molecular mechanism for preQ1-II riboswitch function revealed by molecular dynamics.
Aytenfisu AH; Liberman JA; Wedekind JE; Mathews DH
RNA; 2015 Nov; 21(11):1898-907. PubMed ID: 26370581
[TBL] [Abstract][Full Text] [Related]
7. Single transcriptional and translational preQ1 riboswitches adopt similar pre-folded ensembles that follow distinct folding pathways into the same ligand-bound structure.
Suddala KC; Rinaldi AJ; Feng J; Mustoe AM; Eichhorn CD; Liberman JA; Wedekind JE; Al-Hashimi HM; Brooks CL; Walter NG
Nucleic Acids Res; 2013 Dec; 41(22):10462-75. PubMed ID: 24003028
[TBL] [Abstract][Full Text] [Related]
8. Structure and function analysis of a type III preQ
Schroeder GM; Kiliushik D; Jenkins JL; Wedekind JE
J Biol Chem; 2023 Oct; 299(10):105208. PubMed ID: 37660906
[TBL] [Abstract][Full Text] [Related]
9. Cocrystal structure of a class I preQ1 riboswitch reveals a pseudoknot recognizing an essential hypermodified nucleobase.
Klein DJ; Edwards TE; Ferré-D'Amaré AR
Nat Struct Mol Biol; 2009 Mar; 16(3):343-4. PubMed ID: 19234468
[TBL] [Abstract][Full Text] [Related]
10. Structures of Large RNAs and RNA-Protein Complexes: Toward Structure Determination of Riboswitches.
Grigg JC; Ke A
Methods Enzymol; 2015; 558():213-232. PubMed ID: 26068743
[TBL] [Abstract][Full Text] [Related]
11. Observation of preQ
Warnasooriya C; Ling C; Belashov IA; Salim M; Wedekind JE; Ermolenko DN
RNA Biol; 2019 Sep; 16(9):1086-1092. PubMed ID: 30328747
[TBL] [Abstract][Full Text] [Related]
12. Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations.
Gong Z; Zhao Y; Chen C; Duan Y; Xiao Y
PLoS One; 2014; 9(3):e92247. PubMed ID: 24663240
[TBL] [Abstract][Full Text] [Related]
13. Analysis of a preQ1-I riboswitch in effector-free and bound states reveals a metabolite-programmed nucleobase-stacking spine that controls gene regulation.
Schroeder GM; Dutta D; Cavender CE; Jenkins JL; Pritchett EM; Baker CD; Ashton JM; Mathews DH; Wedekind JE
Nucleic Acids Res; 2020 Aug; 48(14):8146-8164. PubMed ID: 32597951
[TBL] [Abstract][Full Text] [Related]
14. Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography.
Stagno JR; Liu Y; Bhandari YR; Conrad CE; Panja S; Swain M; Fan L; Nelson G; Li C; Wendel DR; White TA; Coe JD; Wiedorn MO; Knoska J; Oberthuer D; Tuckey RA; Yu P; Dyba M; Tarasov SG; Weierstall U; Grant TD; Schwieters CD; Zhang J; Ferré-D'Amaré AR; Fromme P; Draper DE; Liang M; Hunter MS; Boutet S; Tan K; Zuo X; Ji X; Barty A; Zatsepin NA; Chapman HN; Spence JC; Woodson SA; Wang YX
Nature; 2017 Jan; 541(7636):242-246. PubMed ID: 27841871
[TBL] [Abstract][Full Text] [Related]
15. Cooperative and directional folding of the preQ1 riboswitch aptamer domain.
Feng J; Walter NG; Brooks CL
J Am Chem Soc; 2011 Mar; 133(12):4196-9. PubMed ID: 21375305
[TBL] [Abstract][Full Text] [Related]
16. A riboswitch selective for the queuosine precursor preQ1 contains an unusually small aptamer domain.
Roth A; Winkler WC; Regulski EE; Lee BW; Lim J; Jona I; Barrick JE; Ritwik A; Kim JN; Welz R; Iwata-Reuyl D; Breaker RR
Nat Struct Mol Biol; 2007 Apr; 14(4):308-17. PubMed ID: 17384645
[TBL] [Abstract][Full Text] [Related]
17. Atomic-scale characterization of conformational changes in the preQ₁ riboswitch aptamer upon ligand binding.
Petrone PM; Dewhurst J; Tommasi R; Whitehead L; Pomerantz AK
J Mol Graph Model; 2011 Sep; 30():179-85. PubMed ID: 21831681
[TBL] [Abstract][Full Text] [Related]
18. Structural Insights into riboswitch control of the biosynthesis of queuosine, a modified nucleotide found in the anticodon of tRNA.
Kang M; Peterson R; Feigon J
Mol Cell; 2009 Mar; 33(6):784-90. PubMed ID: 19285444
[TBL] [Abstract][Full Text] [Related]
19. The dynamic nature of RNA as key to understanding riboswitch mechanisms.
Haller A; Soulière MF; Micura R
Acc Chem Res; 2011 Dec; 44(12):1339-48. PubMed ID: 21678902
[TBL] [Abstract][Full Text] [Related]
20. Characterization of Engineered PreQ1 Riboswitches for Inducible Gene Regulation in Mycobacteria.
Van Vlack ER; Topp S; Seeliger JC
J Bacteriol; 2017 Mar; 199(6):. PubMed ID: 28069821
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
