These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

269 related articles for article (PubMed ID: 23007888)

  • 1. Lattice Microbes: high-performance stochastic simulation method for the reaction-diffusion master equation.
    Roberts E; Stone JE; Luthey-Schulten Z
    J Comput Chem; 2013 Jan; 34(3):245-55. PubMed ID: 23007888
    [TBL] [Abstract][Full Text] [Related]  

  • 2. URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries.
    Drawert B; Engblom S; Hellander A
    BMC Syst Biol; 2012 Jun; 6():76. PubMed ID: 22727185
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods.
    Ramaswamy R; Sbalzarini IF
    J Chem Phys; 2011 Dec; 135(24):244103. PubMed ID: 22225140
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multiscale Hy3S: hybrid stochastic simulation for supercomputers.
    Salis H; Sotiropoulos V; Kaznessis YN
    BMC Bioinformatics; 2006 Feb; 7():93. PubMed ID: 16504125
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks.
    Ramaswamy R; González-Segredo N; Sbalzarini IF
    J Chem Phys; 2009 Jun; 130(24):244104. PubMed ID: 19566139
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accelerating reaction-diffusion simulations with general-purpose graphics processing units.
    Vigelius M; Lane A; Meyer B
    Bioinformatics; 2011 Jan; 27(2):288-90. PubMed ID: 21062761
    [TBL] [Abstract][Full Text] [Related]  

  • 7. STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithm.
    Kierzek AM
    Bioinformatics; 2002 Mar; 18(3):470-81. PubMed ID: 11934747
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Hybrid CME-ODE method for efficient simulation of the galactose switch in yeast.
    Bianchi DM; Peterson JR; Earnest TM; Hallock MJ; Luthey-Schulten Z
    IET Syst Biol; 2018 Aug; 12(4):170-176. PubMed ID: 33451183
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks.
    Adalsteinsson D; McMillen D; Elston TC
    BMC Bioinformatics; 2004 Mar; 5():24. PubMed ID: 15113411
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Multi-Algorithm Particle Simulations with Spatiocyte.
    Arjunan SNV; Takahashi K
    Methods Mol Biol; 2017; 1611():219-236. PubMed ID: 28451982
    [TBL] [Abstract][Full Text] [Related]  

  • 11. STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB.
    Klingbeil G; Erban R; Giles M; Maini PK
    Bioinformatics; 2011 Apr; 27(8):1170-1. PubMed ID: 21357575
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MONALISA for stochastic simulations of Petri net models of biochemical systems.
    Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
    BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Multiscale reaction-diffusion simulations with Smoldyn.
    Robinson M; Andrews SS; Erban R
    Bioinformatics; 2015 Jul; 31(14):2406-8. PubMed ID: 25788627
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MesoRD 1.0: Stochastic reaction-diffusion simulations in the microscopic limit.
    Fange D; Mahmutovic A; Elf J
    Bioinformatics; 2012 Dec; 28(23):3155-7. PubMed ID: 23044538
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Stochastic analysis of reaction-diffusion processes.
    Hu J; Kang HW; Othmer HG
    Bull Math Biol; 2014 Apr; 76(4):854-94. PubMed ID: 23719732
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Hybrid deterministic/stochastic simulation of complex biochemical systems.
    Lecca P; Bagagiolo F; Scarpa M
    Mol Biosyst; 2017 Nov; 13(12):2672-2686. PubMed ID: 29058744
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Accurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactions.
    Salis H; Kaznessis Y
    J Chem Phys; 2005 Feb; 122(5):54103. PubMed ID: 15740306
    [TBL] [Abstract][Full Text] [Related]  

  • 18. pSpatiocyte: a high-performance simulator for intracellular reaction-diffusion systems.
    Arjunan SNV; Miyauchi A; Iwamoto K; Takahashi K
    BMC Bioinformatics; 2020 Jan; 21(1):33. PubMed ID: 31996129
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A hybrid method for micro-mesoscopic stochastic simulation of reaction-diffusion systems.
    Sayyidmousavi A; Rohlf K; Ilie S
    Math Biosci; 2019 Jun; 312():23-32. PubMed ID: 30998936
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A Gaussian jump process formulation of the reaction-diffusion master equation enables faster exact stochastic simulations.
    Subic T; Sbalzarini IF
    J Chem Phys; 2022 Nov; 157(19):194110. PubMed ID: 36414462
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.