These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
135 related articles for article (PubMed ID: 23013198)
21. Frontiers in molecular dynamics simulations of DNA. Pérez A; Luque FJ; Orozco M Acc Chem Res; 2012 Feb; 45(2):196-205. PubMed ID: 21830782 [TBL] [Abstract][Full Text] [Related]
22. Structural and dynamic effects of alpha-helix deletion in Sso7d: implications for protein thermal stability. Merlino A; Graziano G; Mazzarella L Proteins; 2004 Dec; 57(4):692-701. PubMed ID: 15317021 [TBL] [Abstract][Full Text] [Related]
23. Crenarchaeal chromatin proteins Cren7 and Sul7 compact DNA by inducing rigid bends. Driessen RP; Meng H; Suresh G; Shahapure R; Lanzani G; Priyakumar UD; White MF; Schiessel H; van Noort J; Dame RT Nucleic Acids Res; 2013 Jan; 41(1):196-205. PubMed ID: 23155062 [TBL] [Abstract][Full Text] [Related]
24. Analyzing the robustness of the MM/PBSA free energy calculation method: application to DNA conformational transitions. Brice AR; Dominy BN J Comput Chem; 2011 May; 32(7):1431-40. PubMed ID: 21284003 [TBL] [Abstract][Full Text] [Related]
25. Crystal structure of the crenarchaeal conserved chromatin protein Cren7 and double-stranded DNA complex. Feng Y; Yao H; Wang J Protein Sci; 2010 Jun; 19(6):1253-7. PubMed ID: 20512977 [TBL] [Abstract][Full Text] [Related]
26. The crystal structure of the hyperthermophile chromosomal protein Sso7d bound to DNA. Gao YG; Su SY; Robinson H; Padmanabhan S; Lim L; McCrary BS; Edmondson SP; Shriver JW; Wang AH Nat Struct Biol; 1998 Sep; 5(9):782-6. PubMed ID: 9731772 [TBL] [Abstract][Full Text] [Related]
27. Structure, thermodynamics and cooperativity of the glucocorticoid receptor DNA-binding domain in complex with different response elements. Molecular dynamics simulation and free energy perturbation studies. Eriksson MA; Nilsson L J Mol Biol; 1995 Oct; 253(3):453-72. PubMed ID: 7473727 [TBL] [Abstract][Full Text] [Related]
28. DNA binding and bending by Sac7d is stepwise. Spiriti J; van der Vaart A Chembiochem; 2013 Aug; 14(12):1434-7. PubMed ID: 23853062 [TBL] [Abstract][Full Text] [Related]
29. 20ns molecular dynamics simulation of the antennapedia homeodomain-DNA complex: water interaction and DNA structure analysis. Roy S; Thakur AR J Biomol Struct Dyn; 2010 Feb; 27(4):443-56. PubMed ID: 19916566 [TBL] [Abstract][Full Text] [Related]
31. Solution structure, stability, and nucleic acid binding of the hyperthermophile protein Sso10b2. Biyani K; Kahsai MA; Clark AT; Armstrong TL; Edmondson SP; Shriver JW Biochemistry; 2005 Nov; 44(43):14217-30. PubMed ID: 16245938 [TBL] [Abstract][Full Text] [Related]
32. Binding free energies and free energy components from molecular dynamics and Poisson-Boltzmann calculations. Application to amino acid recognition by aspartyl-tRNA synthetase. Archontis G; Simonson T; Karplus M J Mol Biol; 2001 Feb; 306(2):307-27. PubMed ID: 11237602 [TBL] [Abstract][Full Text] [Related]
33. A stabilizing alpha/beta-hydrophobic core greatly contributes to hyperthermostability of archaeal [P62A]Ssh10b. Fang X; Cui Q; Tong Y; Feng Y; Shan L; Huang L; Wang J Biochemistry; 2008 Oct; 47(43):11212-21. PubMed ID: 18821773 [TBL] [Abstract][Full Text] [Related]
34. Partial B-to-A DNA transition upon minor groove binding of protein Sac7d monitored by Raman spectroscopy. Dostál L; Chen CY; Wang AH; Welfle H Biochemistry; 2004 Aug; 43(30):9600-9. PubMed ID: 15274614 [TBL] [Abstract][Full Text] [Related]
35. Exploring the mechanism of how tvMyb2 recognizes and binds ap65-1 by molecular dynamics simulations and free energy calculations. Li WK; Zheng QC; Zhang HX Mol Biosyst; 2016 Jan; 12(1):76-84. PubMed ID: 26548411 [TBL] [Abstract][Full Text] [Related]
36. Interaction identification of Zif268 and TATA(ZF) proteins with GC-/AT-rich DNA sequence: A theoretical study. Yang B; Zhu Y; Wang Y; Chen G J Comput Chem; 2011 Feb; 32(3):416-28. PubMed ID: 20658568 [TBL] [Abstract][Full Text] [Related]
37. Architecture of nonspecific protein-DNA interactions in the Sso7d-DNA complex. Agback P; Baumann H; Knapp S; Ladenstein R; Härd T Nat Struct Biol; 1998 Jul; 5(7):579-84. PubMed ID: 9665172 [TBL] [Abstract][Full Text] [Related]
38. Natural domain design: enhanced thermal stability of a zinc-lacking ferredoxin isoform shows that a hydrophobic core efficiently replaces the structural metal site. Rocha R; Leal SS; Teixeira VH; Regalla M; Huber H; Baptista AM; Soares CM; Gomes CM Biochemistry; 2006 Aug; 45(34):10376-84. PubMed ID: 16922514 [TBL] [Abstract][Full Text] [Related]
39. A prototypic lysine methyltransferase 4 from archaea with degenerate sequence specificity methylates chromatin proteins Sul7d and Cren7 in different patterns. Niu Y; Xia Y; Wang S; Li J; Niu C; Li X; Zhao Y; Xiong H; Li Z; Lou H; Cao Q J Biol Chem; 2013 May; 288(19):13728-40. PubMed ID: 23530048 [TBL] [Abstract][Full Text] [Related]
40. Heat capacity effects of water molecules and ions at a protein-DNA interface. Bergqvist S; Williams MA; O'Brien R; Ladbury JE J Mol Biol; 2004 Feb; 336(4):829-42. PubMed ID: 15095863 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]