BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 23028187)

  • 1. Haplotype-based profiling of subtle allelic imbalance with SNP arrays.
    Vattathil S; Scheet P
    Genome Res; 2013 Jan; 23(1):152-8. PubMed ID: 23028187
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of allelic imbalance with a statistical model for subtle genomic mosaicism.
    Xia R; Vattathil S; Scheet P
    PLoS Comput Biol; 2014 Aug; 10(8):e1003765. PubMed ID: 25166618
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Normalization of Illumina Infinium whole-genome SNP data improves copy number estimates and allelic intensity ratios.
    Staaf J; Vallon-Christersson J; Lindgren D; Juliusson G; Rosenquist R; Höglund M; Borg A; Ringnér M
    BMC Bioinformatics; 2008 Oct; 9():409. PubMed ID: 18831757
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Segmentation-based detection of allelic imbalance and loss-of-heterozygosity in cancer cells using whole genome SNP arrays.
    Staaf J; Lindgren D; Vallon-Christersson J; Isaksson A; Göransson H; Juliusson G; Rosenquist R; Höglund M; Borg A; Ringnér M
    Genome Biol; 2008; 9(9):R136. PubMed ID: 18796136
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MixHMM: inferring copy number variation and allelic imbalance using SNP arrays and tumor samples mixed with stromal cells.
    Liu Z; Li A; Schulz V; Chen M; Tuck D
    PLoS One; 2010 Jun; 5(6):e10909. PubMed ID: 20532221
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Inferring loss-of-heterozygosity from unpaired tumors using high-density oligonucleotide SNP arrays.
    Beroukhim R; Lin M; Park Y; Hao K; Zhao X; Garraway LA; Fox EA; Hochberg EP; Mellinghoff IK; Hofer MD; Descazeaud A; Rubin MA; Meyerson M; Wong WH; Sellers WR; Li C
    PLoS Comput Biol; 2006 May; 2(5):e41. PubMed ID: 16699594
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Major copy proportion analysis of tumor samples using SNP arrays.
    Li C; Beroukhim R; Weir BA; Winckler W; Garraway LA; Sellers WR; Meyerson M
    BMC Bioinformatics; 2008 Apr; 9():204. PubMed ID: 18426588
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Highly sensitive method for genomewide detection of allelic composition in nonpaired, primary tumor specimens by use of affymetrix single-nucleotide-polymorphism genotyping microarrays.
    Yamamoto G; Nannya Y; Kato M; Sanada M; Levine RL; Kawamata N; Hangaishi A; Kurokawa M; Chiba S; Gilliland DG; Koeffler HP; Ogawa S
    Am J Hum Genet; 2007 Jul; 81(1):114-26. PubMed ID: 17564968
    [TBL] [Abstract][Full Text] [Related]  

  • 9. High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping.
    Peiffer DA; Le JM; Steemers FJ; Chang W; Jenniges T; Garcia F; Haden K; Li J; Shaw CA; Belmont J; Cheung SW; Shen RM; Barker DL; Gunderson KL
    Genome Res; 2006 Sep; 16(9):1136-48. PubMed ID: 16899659
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Genome-wide genetic characterization of bladder cancer: a comparison of high-density single-nucleotide polymorphism arrays and PCR-based microsatellite analysis.
    Hoque MO; Lee CC; Cairns P; Schoenberg M; Sidransky D
    Cancer Res; 2003 May; 63(9):2216-22. PubMed ID: 12727842
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Allelic imbalance analysis by high-density single-nucleotide polymorphic allele (SNP) array with whole genome amplified DNA.
    Wong KK; Tsang YT; Shen J; Cheng RS; Chang YM; Man TK; Lau CC
    Nucleic Acids Res; 2004 May; 32(9):e69. PubMed ID: 15148342
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays.
    Lamy P; Andersen CL; Dyrskjot L; Torring N; Wiuf C
    BMC Bioinformatics; 2007 Nov; 8():434. PubMed ID: 17996079
    [TBL] [Abstract][Full Text] [Related]  

  • 13. High-resolution analysis of allelic imbalance in neuroblastoma cell lines by single nucleotide polymorphism arrays.
    Carr J; Bown NP; Case MC; Hall AG; Lunec J; Tweddle DA
    Cancer Genet Cytogenet; 2007 Jan; 172(2):127-38. PubMed ID: 17213021
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ploidy status and copy number aberrations in primary glioblastomas defined by integrated analysis of allelic ratios, signal ratios and loss of heterozygosity using 500K SNP Mapping Arrays.
    Gardina PJ; Lo KC; Lee W; Cowell JK; Turpaz Y
    BMC Genomics; 2008 Oct; 9():489. PubMed ID: 18928532
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Landscape of somatic allelic imbalances and copy number alterations in HER2-amplified breast cancer.
    Staaf J; Jönsson G; Ringnér M; Baldetorp B; Borg A
    Breast Cancer Res; 2011; 13(6):R129. PubMed ID: 22169037
    [TBL] [Abstract][Full Text] [Related]  

  • 16. TAFFYS: An Integrated Tool for Comprehensive Analysis of Genomic Aberrations in Tumor Samples.
    Liu Y; Li A; Feng H; Wang M
    PLoS One; 2015; 10(6):e0129835. PubMed ID: 26111017
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A comparative study of genome-wide SNP, CGH microarray and protein expression analysis to explore genotypic and phenotypic mechanisms of acquired antiestrogen resistance in breast cancer.
    Johnson N; Speirs V; Curtin NJ; Hall AG
    Breast Cancer Res Treat; 2008 Sep; 111(1):55-63. PubMed ID: 17899364
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An integrated analysis tool for analyzing hybridization intensities and genotypes using new-generation population-optimized human arrays.
    Huang MC; Chuang TP; Chen CH; Wu JY; Chen YT; Li LH; Yang HC
    BMC Genomics; 2016 Mar; 17():266. PubMed ID: 27029637
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GPHMM: an integrated hidden Markov model for identification of copy number alteration and loss of heterozygosity in complex tumor samples using whole genome SNP arrays.
    Li A; Liu Z; Lezon-Geyda K; Sarkar S; Lannin D; Schulz V; Krop I; Winer E; Harris L; Tuck D
    Nucleic Acids Res; 2011 Jul; 39(12):4928-41. PubMed ID: 21398628
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Genome-wide detection of allelic imbalance using human SNPs and high-density DNA arrays.
    Mei R; Galipeau PC; Prass C; Berno A; Ghandour G; Patil N; Wolff RK; Chee MS; Reid BJ; Lockhart DJ
    Genome Res; 2000 Aug; 10(8):1126-37. PubMed ID: 10958631
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.