BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

164 related articles for article (PubMed ID: 23028300)

  • 1. Confidence-based somatic mutation evaluation and prioritization.
    Löwer M; Renard BY; de Graaf J; Wagner M; Paret C; Kneip C; Türeci O; Diken M; Britten C; Kreiter S; Koslowski M; Castle JC; Sahin U
    PLoS Comput Biol; 2012; 8(9):e1002714. PubMed ID: 23028300
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Accuracy and reproducibility of somatic point mutation calling in clinical-type targeted sequencing data.
    Karimnezhad A; Palidwor GA; Thavorn K; Stewart DJ; Campbell PA; Lo B; Perkins TJ
    BMC Med Genomics; 2020 Oct; 13(1):156. PubMed ID: 33059707
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Tumour procurement, DNA extraction, coverage analysis and optimisation of mutation-detection algorithms for human melanoma genomes.
    Wilmott JS; Field MA; Johansson PA; Kakavand H; Shang P; De Paoli-Iseppi R; Vilain RE; Pupo GM; Tembe V; Jakrot V; Shang CA; Cebon J; Shackleton M; Fitzgerald A; Thompson JF; Hayward NK; Mann GJ; Scolyer RA
    Pathology; 2015 Dec; 47(7):683-93. PubMed ID: 26517638
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data.
    do Valle ÍF; Giampieri E; Simonetti G; Padella A; Manfrini M; Ferrari A; Papayannidis C; Zironi I; Garonzi M; Bernardi S; Delledonne M; Martinelli G; Remondini D; Castellani G
    BMC Bioinformatics; 2016 Nov; 17(Suppl 12):341. PubMed ID: 28185561
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Performance of amplicon-based next generation DNA sequencing for diagnostic gene mutation profiling in oncopathology.
    Sie D; Snijders PJ; Meijer GA; Doeleman MW; van Moorsel MI; van Essen HF; Eijk PP; Grünberg K; van Grieken NC; Thunnissen E; Verheul HM; Smit EF; Ylstra B; Heideman DA
    Cell Oncol (Dordr); 2014 Oct; 37(5):353-61. PubMed ID: 25209392
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data.
    Krøigård AB; Thomassen M; Lænkholm AV; Kruse TA; Larsen MJ
    PLoS One; 2016; 11(3):e0151664. PubMed ID: 27002637
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quality assessment of a clinical next-generation sequencing melanoma panel within the Italian Melanoma Intergroup (IMI).
    Vanni I; Casula M; Pastorino L; Manca A; Dalmasso B; Andreotti V; Pisano M; Colombino M; ; Pfeffer U; Tanda ET; Rozzo C; Paliogiannis P; Cossu A; Ghiorzo P; Palmieri G;
    Diagn Pathol; 2020 Dec; 15(1):143. PubMed ID: 33317587
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mirTrios: an integrated pipeline for detection of de novo and rare inherited mutations from trios-based next-generation sequencing.
    Li J; Jiang Y; Wang T; Chen H; Xie Q; Shao Q; Ran X; Xia K; Sun ZS; Wu J
    J Med Genet; 2015 Apr; 52(4):275-81. PubMed ID: 25596308
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimized detection of insertions/deletions (INDELs) in whole-exome sequencing data.
    Kim BY; Park JH; Jo HY; Koo SK; Park MH
    PLoS One; 2017; 12(8):e0182272. PubMed ID: 28792971
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation and optimisation of indel detection workflows for ion torrent sequencing of the BRCA1 and BRCA2 genes.
    Yeo ZX; Wong JC; Rozen SG; Lee AS
    BMC Genomics; 2014 Jun; 15(1):516. PubMed ID: 24962530
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A Computational Protocol for Detecting Somatic Mutations by Integrating DNA and RNA Sequencing.
    Wilkerson MD
    Methods Mol Biol; 2019; 1878():109-124. PubMed ID: 30378072
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The use of FNA samples for whole-exome sequencing and detection of somatic mutations in breast cancer surgical specimens.
    Lee HB; Joung JG; Kim J; Lee KM; Ryu HS; Lee HO; Moon HG; Park WY; Noh DY; Han W
    Cancer Cytopathol; 2015 Nov; 123(11):669-77. PubMed ID: 26265110
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison of whole-exome sequencing of matched fresh and formalin fixed paraffin embedded melanoma tumours: implications for clinical decision making.
    De Paoli-Iseppi R; Johansson PA; Menzies AM; Dias KR; Pupo GM; Kakavand H; Wilmott JS; Mann GJ; Hayward NK; Dinger ME; Long GV; Scolyer RA
    Pathology; 2016 Apr; 48(3):261-6. PubMed ID: 27020503
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A machine learning approach for somatic mutation discovery.
    Wood DE; White JR; Georgiadis A; Van Emburgh B; Parpart-Li S; Mitchell J; Anagnostou V; Niknafs N; Karchin R; Papp E; McCord C; LoVerso P; Riley D; Diaz LA; Jones S; Sausen M; Velculescu VE; Angiuoli SV
    Sci Transl Med; 2018 Sep; 10(457):. PubMed ID: 30185652
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers.
    Hofmann AL; Behr J; Singer J; Kuipers J; Beisel C; Schraml P; Moch H; Beerenwinkel N
    BMC Bioinformatics; 2017 Jan; 18(1):8. PubMed ID: 28049408
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Passenger mutations accurately classify human tumors.
    Salvadores M; Mas-Ponte D; Supek F
    PLoS Comput Biol; 2019 Apr; 15(4):e1006953. PubMed ID: 30986244
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Somatic mutation detection efficiency in EGFR: a comparison between high resolution melting analysis and Sanger sequencing.
    Joy RA; Thelakkattusserry SK; Vikkath N; Bhaskaran R; Krishnan S; Vasudevan D; Ariyannur PS
    BMC Cancer; 2020 Sep; 20(1):902. PubMed ID: 32962681
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A simple method to estimate the in-house limit of detection for genetic mutations with low allele frequencies in whole-exome sequencing analysis by next-generation sequencing.
    Miura T; Yasuda S; Sato Y
    BMC Genom Data; 2021 Feb; 22(1):8. PubMed ID: 33602132
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Combination of RNA- and exome sequencing: Increasing specificity for identification of somatic point mutations and indels in acute leukaemia.
    Hansen MC; Herborg LL; Hansen M; Roug AS; Hokland P
    Leuk Res; 2016 Dec; 51():27-31. PubMed ID: 27821287
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Whole exome sequencing (WES) on formalin-fixed, paraffin-embedded (FFPE) tumor tissue in gastrointestinal stromal tumors (GIST).
    Astolfi A; Urbini M; Indio V; Nannini M; Genovese CG; Santini D; Saponara M; Mandrioli A; Ercolani G; Brandi G; Biasco G; Pantaleo MA
    BMC Genomics; 2015 Nov; 16():892. PubMed ID: 26531060
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.