BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

397 related articles for article (PubMed ID: 23034749)

  • 1. Enhanced sampling algorithms.
    Mitsutake A; Mori Y; Okamoto Y
    Methods Mol Biol; 2013; 924():153-95. PubMed ID: 23034749
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Generalized-ensemble algorithms for molecular simulations of biopolymers.
    Mitsutake A; Sugita Y; Okamoto Y
    Biopolymers; 2001; 60(2):96-123. PubMed ID: 11455545
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Generalized-ensemble algorithms: enhanced sampling techniques for Monte Carlo and molecular dynamics simulations.
    Okamoto Y
    J Mol Graph Model; 2004 May; 22(5):425-39. PubMed ID: 15099838
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Multidimensional generalized-ensemble algorithms for complex systems.
    Mitsutake A; Okamoto Y
    J Chem Phys; 2009 Jun; 130(21):214105. PubMed ID: 19508054
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein folding simulations by generalized-ensemble algorithms.
    Yoda T; Sugita Y; Okamoto Y
    Adv Exp Med Biol; 2014; 805():1-27. PubMed ID: 24446355
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ligand docking simulations by generalized-ensemble algorithms.
    Okamoto Y; Kokubo H; Tanaka T
    Adv Protein Chem Struct Biol; 2013; 92():63-91. PubMed ID: 23954099
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Drug design by generalized-ensemble simulations.
    Okamoto Y
    Curr Pharm Des; 2011; 17(17):1758-72. PubMed ID: 21619524
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Replica-exchange extensions of simulated tempering method.
    Mitsutake A; Okamoto Y
    J Chem Phys; 2004 Aug; 121(6):2491-504. PubMed ID: 15281846
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Replica exchange and expanded ensemble simulations as Gibbs sampling: simple improvements for enhanced mixing.
    Chodera JD; Shirts MR
    J Chem Phys; 2011 Nov; 135(19):194110. PubMed ID: 22112069
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Application of the multiensemble sampling to the equilibrium folding of proteins.
    Son HS; Kim SY; Lee J; Han KK
    Bioinformatics; 2006 Aug; 22(15):1832-7. PubMed ID: 16766555
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Partial multicanonical algorithm for molecular dynamics and Monte Carlo simulations.
    Okumura H
    J Chem Phys; 2008 Sep; 129(12):124116. PubMed ID: 19045015
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Simulated-tempering replica-exchange method for the multidimensional version.
    Mitsutake A
    J Chem Phys; 2009 Sep; 131(9):094105. PubMed ID: 19739847
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH; Mu Y; Stock G
    Proteins; 2005 Aug; 60(3):485-94. PubMed ID: 15977160
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Simulated Tempering Distributed Replica Sampling, Virtual Replica Exchange, and Other Generalized-Ensemble Methods for Conformational Sampling.
    Rauscher S; Neale C; Pomès R
    J Chem Theory Comput; 2009 Oct; 5(10):2640-62. PubMed ID: 26631779
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A divide-and-conquer strategy to improve diffusion sampling in generalized ensemble simulations.
    Min D; Yang W
    J Chem Phys; 2008 Mar; 128(9):094106. PubMed ID: 18331086
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Simulation studies of the fidelity of biomolecular structure ensemble recreation.
    Lätzer J; Eastwood MP; Wolynes PG
    J Chem Phys; 2006 Dec; 125(21):214905. PubMed ID: 17166047
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Designing generalized statistical ensembles for numerical simulations of biopolymers.
    La Penna G; Morante S; Perico A; Rossi GC
    J Chem Phys; 2004 Dec; 121(21):10725-41. PubMed ID: 15549958
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Monte Carlo method for computing density of states and quench probability of potential energy and enthalpy landscapes.
    Mauro JC; Loucks RJ; Balakrishnan J; Raghavan S
    J Chem Phys; 2007 May; 126(19):194103. PubMed ID: 17523794
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Optimization of partial multicanonical molecular dynamics simulations applied to an alanine dipeptide in explicit water solvent.
    Okumura H
    Phys Chem Chem Phys; 2011 Jan; 13(1):114-26. PubMed ID: 21038036
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Convergence of replica exchange molecular dynamics.
    Zhang W; Wu C; Duan Y
    J Chem Phys; 2005 Oct; 123(15):154105. PubMed ID: 16252940
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 20.