BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

155 related articles for article (PubMed ID: 23034809)

  • 1. MsDetector: toward a standard computational tool for DNA microsatellites detection.
    Girgis HZ; Sheetlin SL
    Nucleic Acids Res; 2013 Jan; 41(1):e22. PubMed ID: 23034809
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Look4TRs: a de novo tool for detecting simple tandem repeats using self-supervised hidden Markov models.
    Velasco A; James BT; Wells VD; Girgis HZ
    Bioinformatics; 2020 Jan; 36(2):380-387. PubMed ID: 31287494
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Detecting microsatellites within genomes: significant variation among algorithms.
    Leclercq S; Rivals E; Jarne P
    BMC Bioinformatics; 2007 Apr; 8():125. PubMed ID: 17442102
    [TBL] [Abstract][Full Text] [Related]  

  • 4. STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design.
    Kraemer L; Beszteri B; Gäbler-Schwarz S; Held C; Leese F; Mayer C; Pöhlmann K; Frickenhaus S
    BMC Bioinformatics; 2009 Jan; 10():41. PubMed ID: 19183437
    [TBL] [Abstract][Full Text] [Related]  

  • 5. PILER: identification and classification of genomic repeats.
    Edgar RC; Myers EW
    Bioinformatics; 2005 Jun; 21 Suppl 1():i152-8. PubMed ID: 15961452
    [TBL] [Abstract][Full Text] [Related]  

  • 6. OrthoMCL: identification of ortholog groups for eukaryotic genomes.
    Li L; Stoeckert CJ; Roos DS
    Genome Res; 2003 Sep; 13(9):2178-89. PubMed ID: 12952885
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IMEx: Imperfect Microsatellite Extractor.
    Mudunuri SB; Nagarajaram HA
    Bioinformatics; 2007 May; 23(10):1181-7. PubMed ID: 17379689
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Differential distribution of simple sequence repeats in eukaryotic genome sequences.
    Katti MV; Ranjekar PK; Gupta VS
    Mol Biol Evol; 2001 Jul; 18(7):1161-7. PubMed ID: 11420357
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score.
    Lee H; Schatz MC
    Bioinformatics; 2012 Aug; 28(16):2097-105. PubMed ID: 22668792
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Long microsatellite alleles in Drosophila melanogaster have a downward mutation bias and short persistence times, which cause their genome-wide underrepresentation.
    Harr B; Schlötterer C
    Genetics; 2000 Jul; 155(3):1213-20. PubMed ID: 10880482
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PERF: an exhaustive algorithm for ultra-fast and efficient identification of microsatellites from large DNA sequences.
    Avvaru AK; Sowpati DT; Mishra RK
    Bioinformatics; 2018 Mar; 34(6):943-948. PubMed ID: 29121165
    [TBL] [Abstract][Full Text] [Related]  

  • 12. SciRoKo: a new tool for whole genome microsatellite search and investigation.
    Kofler R; Schlötterer C; Lelley T
    Bioinformatics; 2007 Jul; 23(13):1683-5. PubMed ID: 17463017
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational detection of genomic cis-regulatory modules applied to body patterning in the early Drosophila embryo.
    Rajewsky N; Vergassola M; Gaul U; Siggia ED
    BMC Bioinformatics; 2002 Oct; 3():30. PubMed ID: 12398796
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Study of intrachromosomal duplications among the eukaryote genomes.
    Achaz G; Netter P; Coissac E
    Mol Biol Evol; 2001 Dec; 18(12):2280-8. PubMed ID: 11719577
    [TBL] [Abstract][Full Text] [Related]  

  • 15. GOtcha: a new method for prediction of protein function assessed by the annotation of seven genomes.
    Martin DM; Berriman M; Barton GJ
    BMC Bioinformatics; 2004 Nov; 5():178. PubMed ID: 15550167
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structure-based comparative analysis and prediction of N-linked glycosylation sites in evolutionarily distant eukaryotes.
    Lam PV; Goldman R; Karagiannis K; Narsule T; Simonyan V; Soika V; Mazumder R
    Genomics Proteomics Bioinformatics; 2013 Apr; 11(2):96-104. PubMed ID: 23459159
    [TBL] [Abstract][Full Text] [Related]  

  • 17. ANAT: a tool for constructing and analyzing functional protein networks.
    Yosef N; Zalckvar E; Rubinstein AD; Homilius M; Atias N; Vardi L; Berman I; Zur H; Kimchi A; Ruppin E; Sharan R
    Sci Signal; 2011 Oct; 4(196):pl1. PubMed ID: 22028466
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SSRome: an integrated database and pipelines for exploring microsatellites in all organisms.
    Mokhtar MM; Atia MAM
    Nucleic Acids Res; 2019 Jan; 47(D1):D244-D252. PubMed ID: 30365025
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Genome-scale compositional comparisons in eukaryotes.
    Gentles AJ; Karlin S
    Genome Res; 2001 Apr; 11(4):540-6. PubMed ID: 11282969
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Poly(A) motif prediction using spectral latent features from human DNA sequences.
    Xie B; Jankovic BR; Bajic VB; Song L; Gao X
    Bioinformatics; 2013 Jul; 29(13):i316-25. PubMed ID: 23813000
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.