584 related articles for article (PubMed ID: 23041928)
1. Visualizing transient low-populated structures of RNA.
Dethoff EA; Petzold K; Chugh J; Casiano-Negroni A; Al-Hashimi HM
Nature; 2012 Nov; 491(7426):724-8. PubMed ID: 23041928
[TBL] [Abstract][Full Text] [Related]
2. Shortening the HIV-1 TAR RNA Bulge by a Single Nucleotide Preserves Motional Modes over a Broad Range of Time Scales.
Merriman DK; Xue Y; Yang S; Kimsey IJ; Shakya A; Clay M; Al-Hashimi HM
Biochemistry; 2016 Aug; 55(32):4445-56. PubMed ID: 27232530
[TBL] [Abstract][Full Text] [Related]
3. Demonstration that Small Molecules can Bind and Stabilize Low-abundance Short-lived RNA Excited Conformational States.
Ganser LR; Kelly ML; Patwardhan NN; Hargrove AE; Al-Hashimi HM
J Mol Biol; 2020 Feb; 432(4):1297-1304. PubMed ID: 31863746
[TBL] [Abstract][Full Text] [Related]
4. Invisible RNA state dynamically couples distant motifs.
Lee J; Dethoff EA; Al-Hashimi HM
Proc Natl Acad Sci U S A; 2014 Jul; 111(26):9485-90. PubMed ID: 24979799
[TBL] [Abstract][Full Text] [Related]
5. Characterizing RNA Excited States Using NMR Relaxation Dispersion.
Xue Y; Kellogg D; Kimsey IJ; Sathyamoorthy B; Stein ZW; McBrairty M; Al-Hashimi HM
Methods Enzymol; 2015; 558():39-73. PubMed ID: 26068737
[TBL] [Abstract][Full Text] [Related]
6. 2'-O-Methylation can increase the abundance and lifetime of alternative RNA conformational states.
Abou Assi H; Rangadurai AK; Shi H; Liu B; Clay MC; Erharter K; Kreutz C; Holley CL; Al-Hashimi HM
Nucleic Acids Res; 2020 Dec; 48(21):12365-12379. PubMed ID: 33104789
[TBL] [Abstract][Full Text] [Related]
7. NMR characterization of a kissing complex formed between the TAR RNA element of HIV-1 and a DNA aptamer.
Collin D; van Heijenoort C; Boiziau C; Toulmé JJ; Guittet E
Nucleic Acids Res; 2000 Sep; 28(17):3386-91. PubMed ID: 10954609
[TBL] [Abstract][Full Text] [Related]
8. Mutations in the TAR hairpin affect the equilibrium between alternative conformations of the HIV-1 leader RNA.
Huthoff H; Berkhout B
Nucleic Acids Res; 2001 Jun; 29(12):2594-600. PubMed ID: 11410668
[TBL] [Abstract][Full Text] [Related]
9. Structural biology: the dance of domains.
Puglisi JD
Nature; 2007 Dec; 450(7173):1171-2. PubMed ID: 18097392
[No Abstract] [Full Text] [Related]
10. Resolving the motional modes that code for RNA adaptation.
Zhang Q; Sun X; Watt ED; Al-Hashimi HM
Science; 2006 Feb; 311(5761):653-6. PubMed ID: 16456078
[TBL] [Abstract][Full Text] [Related]
11. HIV-1 nucleocapsid protein activates transient melting of least stable parts of the secondary structure of TAR and its complementary sequence.
Bernacchi S; Stoylov S; Piémont E; Ficheux D; Roques BP; Darlix JL; Mély Y
J Mol Biol; 2002 Mar; 317(3):385-99. PubMed ID: 11922672
[TBL] [Abstract][Full Text] [Related]
12. Visualizing spatially correlated dynamics that directs RNA conformational transitions.
Zhang Q; Stelzer AC; Fisher CK; Al-Hashimi HM
Nature; 2007 Dec; 450(7173):1263-7. PubMed ID: 18097416
[TBL] [Abstract][Full Text] [Related]
13. Resolving sugar puckers in RNA excited states exposes slow modes of repuckering dynamics.
Clay MC; Ganser LR; Merriman DK; Al-Hashimi HM
Nucleic Acids Res; 2017 Aug; 45(14):e134. PubMed ID: 28609788
[TBL] [Abstract][Full Text] [Related]
14. NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform.
Amarasinghe GK; De Guzman RN; Turner RB; Summers MF
J Mol Biol; 2000 May; 299(1):145-56. PubMed ID: 10860728
[TBL] [Abstract][Full Text] [Related]
15. In vitro selection identifies key determinants for loop-loop interactions: RNA aptamers selective for the TAR RNA element of HIV-1.
Ducongé F; Toulmé JJ
RNA; 1999 Dec; 5(12):1605-14. PubMed ID: 10606271
[TBL] [Abstract][Full Text] [Related]
16. Roles of RNA:DNA hybrid stability, RNA structure, and active site conformation in pausing by human RNA polymerase II.
Palangat M; Landick R
J Mol Biol; 2001 Aug; 311(2):265-82. PubMed ID: 11478860
[TBL] [Abstract][Full Text] [Related]
17. The human immunodeficiency virus type 1 TAR RNA upper stem-loop plays distinct roles in reverse transcription and RNA packaging.
Harrich D; Hooker CW; Parry E
J Virol; 2000 Jun; 74(12):5639-46. PubMed ID: 10823871
[TBL] [Abstract][Full Text] [Related]
18. Structures of two RNA domains essential for hepatitis C virus internal ribosome entry site function.
Lukavsky PJ; Otto GA; Lancaster AM; Sarnow P; Puglisi JD
Nat Struct Biol; 2000 Dec; 7(12):1105-10. PubMed ID: 11101890
[TBL] [Abstract][Full Text] [Related]
19. Concerted motions in HIV-1 TAR RNA may allow access to bound state conformations: RNA dynamics from NMR residual dipolar couplings.
Al-Hashimi HM; Gosser Y; Gorin A; Hu W; Majumdar A; Patel DJ
J Mol Biol; 2002 Jan; 315(2):95-102. PubMed ID: 11779230
[TBL] [Abstract][Full Text] [Related]
20. Liquid-crystal NMR structure of HIV TAR RNA bound to its SELEX RNA aptamer reveals the origins of the high stability of the complex.
Van Melckebeke H; Devany M; Di Primo C; Beaurain F; Toulmé JJ; Bryce DL; Boisbouvier J
Proc Natl Acad Sci U S A; 2008 Jul; 105(27):9210-5. PubMed ID: 18607001
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]