259 related articles for article (PubMed ID: 23046413)
1. PAGED: a pathway and gene-set enrichment database to enable molecular phenotype discoveries.
Huang H; Wu X; Sonachalam M; Mandape SN; Pandey R; MacDorman KF; Wan P; Chen JY
BMC Bioinformatics; 2012; 13 Suppl 15(Suppl 15):S2. PubMed ID: 23046413
[TBL] [Abstract][Full Text] [Related]
2. SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways.
Yu J; Zhang Z; Wei J; Ling Y; Xu W; Su Z
BMC Genomics; 2014 Apr; 15():271. PubMed ID: 24712981
[TBL] [Abstract][Full Text] [Related]
3. PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology.
Yue Z; Zheng Q; Neylon MT; Yoo M; Shin J; Zhao Z; Tan AC; Chen JY
Nucleic Acids Res; 2018 Jan; 46(D1):D668-D676. PubMed ID: 29126216
[TBL] [Abstract][Full Text] [Related]
4. Muscle Gene Sets: a versatile methodological aid to functional genomics in the neuromuscular field.
Malatras A; Duguez S; Duddy W
Skelet Muscle; 2019 May; 9(1):10. PubMed ID: 31053169
[TBL] [Abstract][Full Text] [Related]
5. The Pathway Coexpression Network: Revealing pathway relationships.
Pita-Juárez Y; Altschuler G; Kariotis S; Wei W; Koler K; Green C; Tanzi RE; Hide W
PLoS Comput Biol; 2018 Mar; 14(3):e1006042. PubMed ID: 29554099
[TBL] [Abstract][Full Text] [Related]
6. PAGER: constructing PAGs and new PAG-PAG relationships for network biology.
Yue Z; Kshirsagar MM; Nguyen T; Suphavilai C; Neylon MT; Zhu L; Ratliff T; Chen JY
Bioinformatics; 2015 Jun; 31(12):i250-7. PubMed ID: 26072489
[TBL] [Abstract][Full Text] [Related]
7. IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.
Zhang F; Drabier R
BMC Bioinformatics; 2012; 13 Suppl 15(Suppl 15):S7. PubMed ID: 23046449
[TBL] [Abstract][Full Text] [Related]
8. AlgaePath: comprehensive analysis of metabolic pathways using transcript abundance data from next-generation sequencing in green algae.
Zheng HQ; Chiang-Hsieh YF; Chien CH; Hsu BK; Liu TL; Chen CN; Chang WC
BMC Genomics; 2014 Mar; 15(1):196. PubMed ID: 24628857
[TBL] [Abstract][Full Text] [Related]
9. Ontological Discovery Environment: a system for integrating gene-phenotype associations.
Baker EJ; Jay JJ; Philip VM; Zhang Y; Li Z; Kirova R; Langston MA; Chesler EJ
Genomics; 2009 Dec; 94(6):377-87. PubMed ID: 19733230
[TBL] [Abstract][Full Text] [Related]
10. BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses.
Spinelli L; Carpentier S; Montañana Sanchis F; Dalod M; Vu Manh TP
BMC Genomics; 2015 Oct; 16():814. PubMed ID: 26481321
[TBL] [Abstract][Full Text] [Related]
11. PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
Yue Z; Zhang E; Xu C; Khurana S; Batra N; Dang SDH; Cimino JJ; Chen JY
Nucleic Acids Res; 2021 Jan; 49(D1):D589-D599. PubMed ID: 33245774
[TBL] [Abstract][Full Text] [Related]
12. HTSanalyzeR: an R/Bioconductor package for integrated network analysis of high-throughput screens.
Wang X; Terfve C; Rose JC; Markowetz F
Bioinformatics; 2011 Mar; 27(6):879-80. PubMed ID: 21258062
[TBL] [Abstract][Full Text] [Related]
13. Pathway enrichment analysis approach based on topological structure and updated annotation of pathway.
Yang Q; Wang S; Dai E; Zhou S; Liu D; Liu H; Meng Q; Jiang B; Jiang W
Brief Bioinform; 2019 Jan; 20(1):168-177. PubMed ID: 28968630
[TBL] [Abstract][Full Text] [Related]
14. GeneAnalytics: An Integrative Gene Set Analysis Tool for Next Generation Sequencing, RNAseq and Microarray Data.
Ben-Ari Fuchs S; Lieder I; Stelzer G; Mazor Y; Buzhor E; Kaplan S; Bogoch Y; Plaschkes I; Shitrit A; Rappaport N; Kohn A; Edgar R; Shenhav L; Safran M; Lancet D; Guan-Golan Y; Warshawsky D; Shtrichman R
OMICS; 2016 Mar; 20(3):139-51. PubMed ID: 26983021
[TBL] [Abstract][Full Text] [Related]
15. Inferring disease and gene set associations with rank coherence in networks.
Hwang T; Zhang W; Xie M; Liu J; Kuang R
Bioinformatics; 2011 Oct; 27(19):2692-9. PubMed ID: 21824970
[TBL] [Abstract][Full Text] [Related]
16. Pathway networks generated from human disease phenome.
Cirincione AG; Clark KL; Kann MG
BMC Med Genomics; 2018 Sep; 11(Suppl 3):75. PubMed ID: 30255817
[TBL] [Abstract][Full Text] [Related]
17. A novel method for crosstalk analysis of biological networks: improving accuracy of pathway annotation.
Ogris C; Guala D; Helleday T; Sonnhammer EL
Nucleic Acids Res; 2017 Jan; 45(2):e8. PubMed ID: 27664219
[TBL] [Abstract][Full Text] [Related]
18. Identification and Interaction Analysis of Molecular Markers in Colorectal Cancer by Integrated Bioinformatics Analysis.
Han B; Feng D; Yu X; Zhang Y; Liu Y; Zhou L
Med Sci Monit; 2018 Aug; 24():6059-6069. PubMed ID: 30168505
[TBL] [Abstract][Full Text] [Related]
19. HPD: an online integrated human pathway database enabling systems biology studies.
Chowbina SR; Wu X; Zhang F; Li PM; Pandey R; Kasamsetty HN; Chen JY
BMC Bioinformatics; 2009 Oct; 10 Suppl 11(Suppl 11):S5. PubMed ID: 19811689
[TBL] [Abstract][Full Text] [Related]
20. MasterPATH: network analysis of functional genomics screening data.
Rubanova N; Pinna G; Kropp J; Campalans A; Radicella JP; Polesskaya A; Harel-Bellan A; Morozova N
BMC Genomics; 2020 Sep; 21(1):632. PubMed ID: 32928103
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
