171 related articles for article (PubMed ID: 23046631)
1. Bayesian inference based modelling for gene transcriptional dynamics by integrating multiple source of knowledge.
Wang SQ; Li HX
BMC Syst Biol; 2012; 6 Suppl 1(Suppl 1):S3. PubMed ID: 23046631
[TBL] [Abstract][Full Text] [Related]
2. Quantitative modeling of transcriptional regulatory networks by integrating multiple source of knowledge.
Wang SQ; Li HX
Bioprocess Biosyst Eng; 2012 Nov; 35(9):1555-65. PubMed ID: 22614332
[TBL] [Abstract][Full Text] [Related]
3. Quantifying transcriptional regulatory networks by integrating sequence features and microarray data.
Liu H
Bioprocess Biosyst Eng; 2010 May; 33(4):495-505. PubMed ID: 19657679
[TBL] [Abstract][Full Text] [Related]
4. Thermodynamics-based models of transcriptional regulation with gene sequence.
Wang S; Shen Y; Hu J
Bioprocess Biosyst Eng; 2015 Dec; 38(12):2469-76. PubMed ID: 26458822
[TBL] [Abstract][Full Text] [Related]
5. Incorporating nucleosomes into thermodynamic models of transcription regulation.
Raveh-Sadka T; Levo M; Segal E
Genome Res; 2009 Aug; 19(8):1480-96. PubMed ID: 19451592
[TBL] [Abstract][Full Text] [Related]
6. Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization.
Hasegawa T; Yamaguchi R; Nagasaki M; Miyano S; Imoto S
PLoS One; 2014; 9(8):e105942. PubMed ID: 25162401
[TBL] [Abstract][Full Text] [Related]
7. Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data.
Gao F; Foat BC; Bussemaker HJ
BMC Bioinformatics; 2004 Mar; 5():31. PubMed ID: 15113405
[TBL] [Abstract][Full Text] [Related]
8. Improved recovery of cell-cycle gene expression in Saccharomyces cerevisiae from regulatory interactions in multiple omics data.
Panchy NL; Lloyd JP; Shiu SH
BMC Genomics; 2020 Feb; 21(1):159. PubMed ID: 32054475
[TBL] [Abstract][Full Text] [Related]
9. Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.
Albert I; Mavrich TN; Tomsho LP; Qi J; Zanton SJ; Schuster SC; Pugh BF
Nature; 2007 Mar; 446(7135):572-6. PubMed ID: 17392789
[TBL] [Abstract][Full Text] [Related]
10. Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach.
Linde J; Hortschansky P; Fazius E; Brakhage AA; Guthke R; Haas H
BMC Syst Biol; 2012 Jan; 6():6. PubMed ID: 22260221
[TBL] [Abstract][Full Text] [Related]
11. Integrating external biological knowledge in the construction of regulatory networks from time-series expression data.
Lo K; Raftery AE; Dombek KM; Zhu J; Schadt EE; Bumgarner RE; Yeung KY
BMC Syst Biol; 2012 Aug; 6():101. PubMed ID: 22898396
[TBL] [Abstract][Full Text] [Related]
12. Nucleosomal context of binding sites influences transcription factor binding affinity and gene regulation.
Dai Z; Dai X; Xiang Q; Feng J
Genomics Proteomics Bioinformatics; 2009 Dec; 7(4):155-62. PubMed ID: 20172488
[TBL] [Abstract][Full Text] [Related]
13. Flexible modeling of regulatory networks improves transcription factor activity estimation.
Chen C; Padi M
NPJ Syst Biol Appl; 2024 May; 10(1):58. PubMed ID: 38806476
[TBL] [Abstract][Full Text] [Related]
14. Inference of gene pathways using mixture Bayesian networks.
Ko Y; Zhai C; Rodriguez-Zas S
BMC Syst Biol; 2009 May; 3():54. PubMed ID: 19454027
[TBL] [Abstract][Full Text] [Related]
15. Comparative analysis of the transcription-factor gene regulatory networks of E. coli and S. cerevisiae.
Guzmán-Vargas L; Santillán M
BMC Syst Biol; 2008 Jan; 2():13. PubMed ID: 18237429
[TBL] [Abstract][Full Text] [Related]
16. The transcriptional regulatory code of eukaryotic cells--insights from genome-wide analysis of chromatin organization and transcription factor binding.
Barrera LO; Ren B
Curr Opin Cell Biol; 2006 Jun; 18(3):291-8. PubMed ID: 16647254
[TBL] [Abstract][Full Text] [Related]
17. Quantitative analysis of the transcription control mechanism.
Mao C; Brown CR; Falkovskaia E; Dong S; Hrabeta-Robinson E; Wenger L; Boeger H
Mol Syst Biol; 2010 Nov; 6():431. PubMed ID: 21081924
[TBL] [Abstract][Full Text] [Related]
18. Inference of active transcriptional networks by integration of gene expression kinetics modeling and multisource data.
Vu TT; Vohradsky J
Genomics; 2009 May; 93(5):426-33. PubMed ID: 19442636
[TBL] [Abstract][Full Text] [Related]
19. Identifying cooperative transcription factors in yeast using multiple data sources.
Lai FJ; Jhu MH; Chiu CC; Huang YM; Wu WS
BMC Syst Biol; 2014; 8 Suppl 5(Suppl 5):S2. PubMed ID: 25559499
[TBL] [Abstract][Full Text] [Related]
20. Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators.
Padi M; Quackenbush J
BMC Syst Biol; 2015 Nov; 9():80. PubMed ID: 26576632
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]