These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 23047562)

  • 21. FragGeneScan: predicting genes in short and error-prone reads.
    Rho M; Tang H; Ye Y
    Nucleic Acids Res; 2010 Nov; 38(20):e191. PubMed ID: 20805240
    [TBL] [Abstract][Full Text] [Related]  

  • 22. PARTIE: a partition engine to separate metagenomic and amplicon projects in the Sequence Read Archive.
    Torres PJ; Edwards RA; McNair KA
    Bioinformatics; 2017 Aug; 33(15):2389-2391. PubMed ID: 28369246
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Rapid phylogenetic and functional classification of short genomic fragments with signature peptides.
    Berendzen J; Bruno WJ; Cohn JD; Hengartner NW; Kuske CR; McMahon BH; Wolinsky MA; Xie G
    BMC Res Notes; 2012 Aug; 5():460. PubMed ID: 22925230
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Kraken: ultrafast metagenomic sequence classification using exact alignments.
    Wood DE; Salzberg SL
    Genome Biol; 2014 Mar; 15(3):R46. PubMed ID: 24580807
    [TBL] [Abstract][Full Text] [Related]  

  • 25. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
    Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
    BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Exploration of noncoding sequences in metagenomes.
    Tobar-Tosse F; Rodríguez AC; Vélez PE; Zambrano MM; Moreno PA
    PLoS One; 2013; 8(3):e59488. PubMed ID: 23536879
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Woods: A fast and accurate functional annotator and classifier of genomic and metagenomic sequences.
    Sharma AK; Gupta A; Kumar S; Dhakan DB; Sharma VK
    Genomics; 2015 Jul; 106(1):1-6. PubMed ID: 25863333
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Estimating DNA coverage and abundance in metagenomes using a gamma approximation.
    Hooper SD; Dalevi D; Pati A; Mavromatis K; Ivanova NN; Kyrpides NC
    Bioinformatics; 2010 Feb; 26(3):295-301. PubMed ID: 20008478
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Elviz - exploration of metagenome assemblies with an interactive visualization tool.
    Cantor M; Nordberg H; Smirnova T; Hess M; Tringe S; Dubchak I
    BMC Bioinformatics; 2015 Apr; 16(1):130. PubMed ID: 25928663
    [TBL] [Abstract][Full Text] [Related]  

  • 30. VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data.
    Ren J; Ahlgren NA; Lu YY; Fuhrman JA; Sun F
    Microbiome; 2017 Jul; 5(1):69. PubMed ID: 28683828
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Large-scale machine learning for metagenomics sequence classification.
    Vervier K; Mahé P; Tournoud M; Veyrieras JB; Vert JP
    Bioinformatics; 2016 Apr; 32(7):1023-32. PubMed ID: 26589281
    [TBL] [Abstract][Full Text] [Related]  

  • 32. CONSULT-II: accurate taxonomic identification and profiling using locality-sensitive hashing.
    Şapcı AOB; Rachtman E; Mirarab S
    Bioinformatics; 2024 Mar; 40(4):. PubMed ID: 38492564
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Combining gene prediction methods to improve metagenomic gene annotation.
    Yok NG; Rosen GL
    BMC Bioinformatics; 2011 Jan; 12():20. PubMed ID: 21232129
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Estimating the total genome length of a metagenomic sample using k-mers.
    Hua K; Zhang X
    BMC Genomics; 2019 Apr; 20(Suppl 2):183. PubMed ID: 30967110
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool.
    Zou B; Li J; Zhou Q; Quan ZX
    PLoS One; 2017; 12(3):e0174609. PubMed ID: 28350876
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Genovo: de novo assembly for metagenomes.
    Laserson J; Jojic V; Koller D
    J Comput Biol; 2011 Mar; 18(3):429-43. PubMed ID: 21385045
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A comprehensive investigation of metagenome assembly by linked-read sequencing.
    Zhang L; Fang X; Liao H; Zhang Z; Zhou X; Han L; Chen Y; Qiu Q; Li SC
    Microbiome; 2020 Nov; 8(1):156. PubMed ID: 33176883
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Strain/species identification in metagenomes using genome-specific markers.
    Tu Q; He Z; Zhou J
    Nucleic Acids Res; 2014 Apr; 42(8):e67. PubMed ID: 24523352
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Deep learning models for bacteria taxonomic classification of metagenomic data.
    Fiannaca A; La Paglia L; La Rosa M; Lo Bosco G; Renda G; Rizzo R; Gaglio S; Urso A
    BMC Bioinformatics; 2018 Jul; 19(Suppl 7):198. PubMed ID: 30066629
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Reference-independent comparative metagenomics using cross-assembly: crAss.
    Dutilh BE; Schmieder R; Nulton J; Felts B; Salamon P; Edwards RA; Mokili JL
    Bioinformatics; 2012 Dec; 28(24):3225-31. PubMed ID: 23074261
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.