These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

159 related articles for article (PubMed ID: 23057822)

  • 1. RNA locally optimal secondary structures.
    Saffarian A; Giraud M; de Monte A; Touzet H
    J Comput Biol; 2012 Oct; 19(10):1120-33. PubMed ID: 23057822
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNALOSS: a web server for RNA locally optimal secondary structures.
    Clote P
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W600-4. PubMed ID: 15980545
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Energy-based RNA consensus secondary structure prediction in multiple sequence alignments.
    Washietl S; Bernhart SH; Kellis M
    Methods Mol Biol; 2014; 1097():125-41. PubMed ID: 24639158
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MultiSETTER: web server for multiple RNA structure comparison.
    Čech P; Hoksza D; Svozil D
    BMC Bioinformatics; 2015 Aug; 16():253. PubMed ID: 26264783
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search.
    Havgaard JH; Lyngsø RB; Gorodkin J
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computing the partition function for kinetically trapped RNA secondary structures.
    Lorenz WA; Clote P
    PLoS One; 2011 Jan; 6(1):e16178. PubMed ID: 21297972
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The RNAz web server: prediction of thermodynamically stable and evolutionarily conserved RNA structures.
    Gruber AR; Neuböck R; Hofacker IL; Washietl S
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W335-8. PubMed ID: 17452347
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation.
    Li Y; Shi X; Liang Y; Xie J; Zhang Y; Ma Q
    BMC Bioinformatics; 2017 Jan; 18(1):51. PubMed ID: 28109252
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structure clustering features on the Sfold Web server.
    Chan CY; Lawrence CE; Ding Y
    Bioinformatics; 2005 Oct; 21(20):3926-8. PubMed ID: 16109749
    [TBL] [Abstract][Full Text] [Related]  

  • 10. INFO-RNA--a server for fast inverse RNA folding satisfying sequence constraints.
    Busch A; Backofen R
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W310-3. PubMed ID: 17452349
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Memory efficient folding algorithms for circular RNA secondary structures.
    Hofacker IL; Stadler PF
    Bioinformatics; 2006 May; 22(10):1172-6. PubMed ID: 16452114
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Rtools: a web server for various secondary structural analyses on single RNA sequences.
    Hamada M; Ono Y; Kiryu H; Sato K; Kato Y; Fukunaga T; Mori R; Asai K
    Nucleic Acids Res; 2016 Jul; 44(W1):W302-7. PubMed ID: 27131356
    [TBL] [Abstract][Full Text] [Related]  

  • 13. ILM: a web server for predicting RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W146-9. PubMed ID: 15215368
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Aligning two RNA secondary structures with l-block.
    Wang Z; Tillier ER
    Biomol Eng; 2007 Sep; 24(3):321-6. PubMed ID: 17502167
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.
    Xayaphoummine A; Bucher T; Isambert H
    Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W605-10. PubMed ID: 15980546
    [TBL] [Abstract][Full Text] [Related]  

  • 16. An efficient algorithm to compute the landscape of locally optimal RNA secondary structures with respect to the Nussinov-Jacobson energy model.
    Clote P
    J Comput Biol; 2005; 12(1):83-101. PubMed ID: 15725735
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Web-Beagle: a web server for the alignment of RNA secondary structures.
    Mattei E; Pietrosanto M; Ferrè F; Helmer-Citterich M
    Nucleic Acids Res; 2015 Jul; 43(W1):W493-7. PubMed ID: 25977293
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DIAL: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities.
    Ferrè F; Ponty Y; Lorenz WA; Clote P
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W659-68. PubMed ID: 17567620
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.
    Hua L; Song Y; Kim N; Laing C; Wang JT; Schlick T
    PLoS One; 2016; 11(1):e0147097. PubMed ID: 26789998
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Vienna RNA secondary structure server.
    Hofacker IL
    Nucleic Acids Res; 2003 Jul; 31(13):3429-31. PubMed ID: 12824340
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.