BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

149 related articles for article (PubMed ID: 23066895)

  • 1. Advances in the prediction of protein-peptide binding affinities: implications for peptide-based drug discovery.
    Audie J; Swanson J
    Chem Biol Drug Des; 2013 Jan; 81(1):50-60. PubMed ID: 23066895
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Toward the prediction of class I and II mouse major histocompatibility complex-peptide-binding affinity: in silico bioinformatic step-by-step guide using quantitative structure-activity relationships.
    Hattotuwagama CK; Doytchinova IA; Flower DR
    Methods Mol Biol; 2007; 409():227-45. PubMed ID: 18450004
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Recent work in the development and application of protein-peptide docking.
    Audie J; Swanson J
    Future Med Chem; 2012 Aug; 4(12):1619-44. PubMed ID: 22917249
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Binding of antifusion peptides with HIVgp41 from molecular dynamics simulations: quantitative correlation with experiment.
    Strockbine B; Rizzo RC
    Proteins; 2007 May; 67(3):630-42. PubMed ID: 17335007
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational design of peptide ligands.
    Vanhee P; van der Sloot AM; Verschueren E; Serrano L; Rousseau F; Schymkowitz J
    Trends Biotechnol; 2011 May; 29(5):231-9. PubMed ID: 21316780
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural prediction of peptides binding to MHC class I molecules.
    Bui HH; Schiewe AJ; von Grafenstein H; Haworth IS
    Proteins; 2006 Apr; 63(1):43-52. PubMed ID: 16447245
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Physics-based methods for studying protein-ligand interactions.
    Huang N; Jacobson MP
    Curr Opin Drug Discov Devel; 2007 May; 10(3):325-31. PubMed ID: 17554859
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization.
    Schafroth HD; Floudas CA
    Proteins; 2004 Feb; 54(3):534-56. PubMed ID: 14748001
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular modeling of hydration in drug design.
    Mancera RL
    Curr Opin Drug Discov Devel; 2007 May; 10(3):275-80. PubMed ID: 17554853
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Importance of molecular computer modeling in anticancer drug development.
    Geromichalos GD
    J BUON; 2007 Sep; 12 Suppl 1():S101-18. PubMed ID: 17935268
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Linear interaction energy: method and applications in drug design.
    Gutiérrez-de-Terán H; Aqvist J
    Methods Mol Biol; 2012; 819():305-23. PubMed ID: 22183545
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structure-based prediction of protein-peptide specificity in Rosetta.
    King CA; Bradley P
    Proteins; 2010 Dec; 78(16):3437-49. PubMed ID: 20954182
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Advances and applications of binding affinity prediction methods in drug discovery.
    Parenti MD; Rastelli G
    Biotechnol Adv; 2012; 30(1):244-50. PubMed ID: 21856406
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting peptide binding to Major Histocompatibility Complex molecules.
    Liao WW; Arthur JW
    Autoimmun Rev; 2011 Jun; 10(8):469-73. PubMed ID: 21333759
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure-based computational analysis of protein binding sites for function and druggability prediction.
    Nisius B; Sha F; Gohlke H
    J Biotechnol; 2012 Jun; 159(3):123-34. PubMed ID: 22197384
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Chemogenomics in drug discovery: computational methods based on the comparison of binding sites.
    Vulpetti A; Kalliokoski T; Milletti F
    Future Med Chem; 2012 Oct; 4(15):1971-9. PubMed ID: 23088277
    [TBL] [Abstract][Full Text] [Related]  

  • 17. An all atom energy based computational protocol for predicting binding affinities of protein-ligand complexes.
    Jain T; Jayaram B
    FEBS Lett; 2005 Dec; 579(29):6659-66. PubMed ID: 16307743
    [TBL] [Abstract][Full Text] [Related]  

  • 18. HLA-peptide binding prediction using structural and modeling principles.
    Kangueane P; Sakharkar MK
    Methods Mol Biol; 2007; 409():293-9. PubMed ID: 18450009
    [TBL] [Abstract][Full Text] [Related]  

  • 19. In silico prediction of peptide-MHC binding affinity using SVRMHC.
    Liu W; Wan J; Meng X; Flower DR; Li T
    Methods Mol Biol; 2007; 409():283-91. PubMed ID: 18450008
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Combination of a modified scoring function with two-dimensional descriptors for calculation of binding affinities of bulky, flexible ligands to proteins.
    Hetényi C; Paragi G; Maran U; Timár Z; Karelson M; Penke B
    J Am Chem Soc; 2006 Feb; 128(4):1233-9. PubMed ID: 16433540
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.