BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

374 related articles for article (PubMed ID: 23081734)

  • 1. LFQuant: a label-free fast quantitative analysis tool for high-resolution LC-MS/MS proteomics data.
    Zhang W; Zhang J; Xu C; Li N; Liu H; Ma J; Zhu Y; Xie H
    Proteomics; 2012 Dec; 12(23-24):3475-84. PubMed ID: 23081734
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MassChroQ: a versatile tool for mass spectrometry quantification.
    Valot B; Langella O; Nano E; Zivy M
    Proteomics; 2011 Sep; 11(17):3572-7. PubMed ID: 21751374
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Compid: a new software tool to integrate and compare MS/MS based protein identification results from Mascot and Paragon.
    Lietzén N; Natri L; Nevalainen OS; Salmi J; Nyman TA
    J Proteome Res; 2010 Dec; 9(12):6795-800. PubMed ID: 20973569
    [TBL] [Abstract][Full Text] [Related]  

  • 4. RIBAR and xRIBAR: Methods for reproducible relative MS/MS-based label-free protein quantification.
    Colaert N; Gevaert K; Martens L
    J Proteome Res; 2011 Jul; 10(7):3183-9. PubMed ID: 21604685
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Label-free LC-MS/MS identification of phosphatidylglycerol-regulated proteins in Synechocystis sp. PCC6803.
    Talamantes T; Ughy B; Domonkos I; Kis M; Gombos Z; Prokai L
    Proteomics; 2014 May; 14(9):1053-7. PubMed ID: 24574175
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparative evaluation of label-free SINQ normalized spectral index quantitation in the central proteomics facilities pipeline.
    Trudgian DC; Ridlova G; Fischer R; Mackeen MM; Ternette N; Acuto O; Kessler BM; Thomas B
    Proteomics; 2011 Jul; 11(14):2790-7. PubMed ID: 21656681
    [TBL] [Abstract][Full Text] [Related]  

  • 7. An exclusion list based label-free proteome quantification approach using an LTQ Orbitrap.
    Muntel J; Hecker M; Becher D
    Rapid Commun Mass Spectrom; 2012 Mar; 26(6):701-9. PubMed ID: 22328225
    [TBL] [Abstract][Full Text] [Related]  

  • 8. ProteinQuant Suite: a bundle of automated software tools for label-free quantitative proteomics.
    Mann B; Madera M; Sheng Q; Tang H; Mechref Y; Novotny MV
    Rapid Commun Mass Spectrom; 2008 Dec; 22(23):3823-34. PubMed ID: 18985620
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
    Mueller LN; Rinner O; Schmidt A; Letarte S; Bodenmiller B; Brusniak MY; Vitek O; Aebersold R; Müller M
    Proteomics; 2007 Oct; 7(19):3470-80. PubMed ID: 17726677
    [TBL] [Abstract][Full Text] [Related]  

  • 10. An automated pipeline for high-throughput label-free quantitative proteomics.
    Weisser H; Nahnsen S; Grossmann J; Nilse L; Quandt A; Brauer H; Sturm M; Kenar E; Kohlbacher O; Aebersold R; Malmström L
    J Proteome Res; 2013 Apr; 12(4):1628-44. PubMed ID: 23391308
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Optimization of Search Engines and Postprocessing Approaches to Maximize Peptide and Protein Identification for High-Resolution Mass Data.
    Tu C; Sheng Q; Li J; Ma D; Shen X; Wang X; Shyr Y; Yi Z; Qu J
    J Proteome Res; 2015 Nov; 14(11):4662-73. PubMed ID: 26390080
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparative LC-MS: a landscape of peaks and valleys.
    America AH; Cordewener JH
    Proteomics; 2008 Feb; 8(4):731-49. PubMed ID: 18297651
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improved reporter ion assignment of raw isobaric stable isotope labeled liquid chromatography/matrix-assisted laser desorption/ionization tandem time-of-flight mass spectral data for quantitative proteomics.
    Jakoby T; Tholey A; van den Berg BH
    Rapid Commun Mass Spectrom; 2012 Dec; 26(23):2777-85. PubMed ID: 23124669
    [TBL] [Abstract][Full Text] [Related]  

  • 14. An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    Mueller LN; Brusniak MY; Mani DR; Aebersold R
    J Proteome Res; 2008 Jan; 7(1):51-61. PubMed ID: 18173218
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MassUntangler: a novel alignment tool for label-free liquid chromatography-mass spectrometry proteomic data.
    Ballardini R; Benevento M; Arrigoni G; Pattini L; Roda A
    J Chromatogr A; 2011 Dec; 1218(49):8859-68. PubMed ID: 21783198
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Quantitative protein profiling by mass spectrometry using label-free proteomics.
    Haqqani AS; Kelly JF; Stanimirovic DB
    Methods Mol Biol; 2008; 439():241-56. PubMed ID: 18370108
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Isotope coded protein label quantification of serum proteins--comparison with the label-free LC-MS and validation using the MRM approach.
    Turtoi A; Mazzucchelli GD; De Pauw E
    Talanta; 2010 Feb; 80(4):1487-95. PubMed ID: 20082806
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An Optimized Informatics Pipeline for Mass Spectrometry-Based Peptidomics.
    Wu C; Monroe ME; Xu Z; Slysz GW; Payne SH; Rodland KD; Liu T; Smith RD
    J Am Soc Mass Spectrom; 2015 Dec; 26(12):2002-8. PubMed ID: 26015166
    [TBL] [Abstract][Full Text] [Related]  

  • 19. KYSS: mass spectrometry data quality assessment for protein analysis and large-scale proteomics.
    Such-Sanmartín G; Sidoli S; Ventura-Espejo E; Jensen ON
    Biochem Biophys Res Commun; 2014 Mar; 445(4):702-7. PubMed ID: 24480439
    [TBL] [Abstract][Full Text] [Related]  

  • 20. i-RUBY: a novel software for quantitative analysis of highly accurate shotgun-proteomics liquid chromatography/tandem mass spectrometry data obtained without stable-isotope labeling of proteins.
    Wada K; Ogiwara A; Nagasaka K; Tanaka N; Komatsu Y
    Rapid Commun Mass Spectrom; 2011 Apr; 25(7):960-8. PubMed ID: 21416533
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.