102 related articles for article (PubMed ID: 23085256)
21. A comprehensive analysis of mammalian mitochondrial genome base composition and improved phylogenetic methods.
Gibson A; Gowri-Shankar V; Higgs PG; Rattray M
Mol Biol Evol; 2005 Feb; 22(2):251-64. PubMed ID: 15483324
[TBL] [Abstract][Full Text] [Related]
22. On the quality of tree-based protein classification.
Lazareva-Ulitsky B; Diemer K; Thomas PD
Bioinformatics; 2005 May; 21(9):1876-90. PubMed ID: 15647305
[TBL] [Abstract][Full Text] [Related]
23. MamMiBase: a mitochondrial genome database for mammalian phylogenetic studies.
Vasconcelos AT; Guimarães AC; Castelletti CH; Caruso CS; Ribeiro C; Yokaichiya F; Armôa GR; Pereira Gda S; da Silva IT; Schrago CG; Fernandes AL; da Silveira AR; Carneiro AG; Carvalho BM; Viana CJ; Gramkow D; Lima FJ; Corrêa LG; Mudado Mde A; Nehab-Hess P; Souza Rd; Corrêa RL; Russo CA
Bioinformatics; 2005 May; 21(10):2566-7. PubMed ID: 15713730
[TBL] [Abstract][Full Text] [Related]
24. Markov model plus k-word distributions: a synergy that produces novel statistical measures for sequence comparison.
Dai Q; Yang Y; Wang T
Bioinformatics; 2008 Oct; 24(20):2296-302. PubMed ID: 18710871
[TBL] [Abstract][Full Text] [Related]
25. Phylogenetic analysis of ticks (Acari: Ixodida) using mitochondrial genomes and nuclear rRNA genes indicates that the genus Amblyomma is polyphyletic.
Burger TD; Shao R; Beati L; Miller H; Barker SC
Mol Phylogenet Evol; 2012 Jul; 64(1):45-55. PubMed ID: 22465402
[TBL] [Abstract][Full Text] [Related]
26. Transcriptional and phylogenetic analysis of five complete ambystomatid salamander mitochondrial genomes.
Samuels AK; Weisrock DW; Smith JJ; France KJ; Walker JA; Putta S; Voss SR
Gene; 2005 Apr; 349():43-53. PubMed ID: 15780978
[TBL] [Abstract][Full Text] [Related]
27. A novel feature-based method for whole genome phylogenetic analysis without alignment: application to HEV genotyping and subtyping.
Liu Z; Meng J; Sun X
Biochem Biophys Res Commun; 2008 Apr; 368(2):223-30. PubMed ID: 18230342
[TBL] [Abstract][Full Text] [Related]
28. The phylogeny of Cetartiodactyla: the importance of dense taxon sampling, missing data, and the remarkable promise of cytochrome b to provide reliable species-level phylogenies.
Agnarsson I; May-Collado LJ
Mol Phylogenet Evol; 2008 Sep; 48(3):964-85. PubMed ID: 18590827
[TBL] [Abstract][Full Text] [Related]
29. The complete mitogenome of the snakehead Channa argus (Perciformes: Channoidei): genome characterization and phylogenetic implications.
Wang J; Yang G
Mitochondrial DNA; 2011 Aug; 22(4):120-9. PubMed ID: 22040081
[TBL] [Abstract][Full Text] [Related]
30. Sequencing and phylogenomic analysis of whole mitochondrial genomes of animals.
Zardoya R; Suárez M
Methods Mol Biol; 2008; 422():185-200. PubMed ID: 18629668
[TBL] [Abstract][Full Text] [Related]
31. An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing.
Margulies EH; Vinson JP; ; Miller W; Jaffe DB; Lindblad-Toh K; Chang JL; Green ED; Lander ES; Mullikin JC; Clamp M
Proc Natl Acad Sci U S A; 2005 Mar; 102(13):4795-800. PubMed ID: 15778292
[TBL] [Abstract][Full Text] [Related]
32. Complete mitochondrial genome of a new vole Proedromys liangshanensis (Rodentia: Cricetidae) and phylogenetic analysis with related species: are there implications for the validity of the genus Proedromys?
Hao H; Liu S; Zhang X; Chen W; Song Z; Peng H; Liu Y; Yue B
Mitochondrial DNA; 2011 Feb; 22(1-2):28-34. PubMed ID: 21707319
[TBL] [Abstract][Full Text] [Related]
33. Comparison of the accuracies of several phylogenetic methods using protein and DNA sequences.
Hall BG
Mol Biol Evol; 2005 Mar; 22(3):792-802. PubMed ID: 15590907
[TBL] [Abstract][Full Text] [Related]
34. PTreeRec: Phylogenetic Tree Reconstruction based on genome BLAST distance.
Deng R; Huang M; Wang J; Huang Y; Yang J; Feng J; Wang X
Comput Biol Chem; 2006 Aug; 30(4):300-2. PubMed ID: 16797236
[TBL] [Abstract][Full Text] [Related]
35. Viral genome phylogeny based on Lempel-Ziv complexity and Hausdorff distance.
Yu C; He RL; Yau SS
J Theor Biol; 2014 May; 348():12-20. PubMed ID: 24486229
[TBL] [Abstract][Full Text] [Related]
36. K-mer natural vector and its application to the phylogenetic analysis of genetic sequences.
Wen J; Chan RH; Yau SC; He RL; Yau SS
Gene; 2014 Aug; 546(1):25-34. PubMed ID: 24858075
[TBL] [Abstract][Full Text] [Related]
37. Phylogenetic analysis based on spectral methods.
Abeysundera M; Field C; Gu H
Mol Biol Evol; 2012 Feb; 29(2):579-97. PubMed ID: 21880577
[TBL] [Abstract][Full Text] [Related]
38. Complete mitochondrial genome of Membranipora grandicella (Bryozoa: Cheilostomatida) determined with next-generation sequencing: the first representative of the suborder Malacostegina.
Shen X; Tian M; Meng X; Liu H; Cheng H; Zhu C; Zhao F
Comp Biochem Physiol Part D Genomics Proteomics; 2012 Sep; 7(3):248-53. PubMed ID: 22503287
[TBL] [Abstract][Full Text] [Related]
39. The complete mitochondrial genome of the large yellow croaker, Larimichthys crocea (Perciformes, Sciaenidae): unusual features of its control region and the phylogenetic position of the Sciaenidae.
Cui Z; Liu Y; Li CP; You F; Chu KH
Gene; 2009 Mar; 432(1-2):33-43. PubMed ID: 19100818
[TBL] [Abstract][Full Text] [Related]
40. Alignment-free comparison of genome sequences by a new numerical characterization.
Huang G; Zhou H; Li Y; Xu L
J Theor Biol; 2011 Jul; 281(1):107-12. PubMed ID: 21536050
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
