BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

156 related articles for article (PubMed ID: 23085385)

  • 1. Structural attributes of nucleotide sequences in promoter regions of supercoiling-sensitive genes: how to relate microarray expression data with genomic sequences.
    Kravatskaya GI; Chechetkin VR; Kravatsky YV; Tumanyan VG
    Genomics; 2013 Jan; 101(1):1-11. PubMed ID: 23085385
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme.
    Schulz A; Langowski J; Rippe K
    J Mol Biol; 2000 Jul; 300(4):709-25. PubMed ID: 10891265
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Flagellar and global gene regulation in Helicobacter pylori modulated by changes in DNA supercoiling.
    Ye F; Brauer T; Niehus E; Drlica K; Josenhans C; Suerbaum S
    Int J Med Microbiol; 2007 Apr; 297(2):65-81. PubMed ID: 17276136
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effect of varying the supercoiling of DNA on transcription and its regulation.
    Lim HM; Lewis DE; Lee HJ; Liu M; Adhya S
    Biochemistry; 2003 Sep; 42(36):10718-25. PubMed ID: 12962496
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The function of the upstream region of the sigma 54-dependent Klebsiella pneumoniae nifL promoter is sensitive to DNA supercoiling.
    Whitehall S; Austin S; Dixon R
    Mol Microbiol; 1993 Sep; 9(5):1107-17. PubMed ID: 7934916
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
    Opel ML; Aeling KA; Holmes WM; Johnson RC; Benham CJ; Hatfield GW
    Mol Microbiol; 2004 Jul; 53(2):665-74. PubMed ID: 15228542
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Role of DNA supercoiling and rpoS sigma factor in the osmotic and growth phase-dependent induction of the gene osmE of Escherichia coli K12.
    Conter A; Menchon C; Gutierrez C
    J Mol Biol; 1997 Oct; 273(1):75-83. PubMed ID: 9367747
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural coupling between RNA polymerase composition and DNA supercoiling in coordinating transcription: a global role for the omega subunit?
    Geertz M; Travers A; Mehandziska S; Sobetzko P; Chandra-Janga S; Shimamoto N; Muskhelishvili G
    mBio; 2011; 2(4):. PubMed ID: 21810966
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Coexistence of different base periodicities in prokaryotic genomes as related to DNA curvature, supercoiling, and transcription.
    Kravatskaya GI; Kravatsky YV; Chechetkin VR; Tumanyan VG
    Genomics; 2011 Sep; 98(3):223-31. PubMed ID: 21722724
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Growth inhibition mediated by excess negative supercoiling: the interplay between transcription elongation, R-loop formation and DNA topology.
    Drolet M
    Mol Microbiol; 2006 Feb; 59(3):723-30. PubMed ID: 16420346
    [TBL] [Abstract][Full Text] [Related]  

  • 11. SigmaS-dependent gene expression at the onset of stationary phase in Escherichia coli: function of sigmaS-dependent genes and identification of their promoter sequences.
    Lacour S; Landini P
    J Bacteriol; 2004 Nov; 186(21):7186-95. PubMed ID: 15489429
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular biology. When a part is as good as the whole.
    deHaseth PL; Nilsen TW
    Science; 2004 Feb; 303(5662):1307-8. PubMed ID: 14988541
    [No Abstract]   [Full Text] [Related]  

  • 13. [The specificity in promoter recognition by the Bacillus subtilis RNA polymerase deltaA and deltaH holoenzymes is connected with periodicities in the promoter nucleotide sequences].
    Kravatskaia GI; KravatskiÄ­ IuV; Mil'chevskiÄ­ IuV; Esipova NG
    Biofizika; 2007; 52(6):965-71. PubMed ID: 18225647
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure.
    Hardy CD; Cozzarelli NR
    Mol Microbiol; 2005 Sep; 57(6):1636-52. PubMed ID: 16135230
    [TBL] [Abstract][Full Text] [Related]  

  • 15. [Fourier analysis of nucleotide sequences. Periodicity in E. coli promoter sequences].
    Kutuzova GI; Frank GK; Makeev VIu; Esipova NG; Polozov RV
    Biofizika; 1997; 42(2):354-62. PubMed ID: 9172679
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli.
    Cheung KJ; Badarinarayana V; Selinger DW; Janse D; Church GM
    Genome Res; 2003 Feb; 13(2):206-15. PubMed ID: 12566398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes.
    Vuthoori S; Bowers CW; McCracken A; Dombroski AJ; Hinton DM
    J Mol Biol; 2001 Jun; 309(3):561-72. PubMed ID: 11397080
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DNA supercoiling contributes to disconnect sigmaS accumulation from sigmaS-dependent transcription in Escherichia coli.
    Bordes P; Conter A; Morales V; Bouvier J; Kolb A; Gutierrez C
    Mol Microbiol; 2003 Apr; 48(2):561-71. PubMed ID: 12675812
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Effects of RNA polymerase modifications on transcription-induced negative supercoiling and associated R-loop formation.
    Broccoli S; Rallu F; Sanscartier P; Cerritelli SM; Crouch RJ; Drolet M
    Mol Microbiol; 2004 Jun; 52(6):1769-79. PubMed ID: 15186424
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural and dynamic basis of a supercoiling-responsive DNA element.
    Bae SH; Yun SH; Sun D; Lim HM; Choi BS
    Nucleic Acids Res; 2006; 34(1):254-61. PubMed ID: 16414956
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.