143 related articles for article (PubMed ID: 23088372)
1. On the combinatorics of sparsification.
Huang FW; Reidys CM
Algorithms Mol Biol; 2012 Oct; 7(1):28. PubMed ID: 23088372
[TBL] [Abstract][Full Text] [Related]
2. A phase transition in energy-filtered RNA secondary structures.
Han HS; Reidys CM
J Comput Biol; 2012 Oct; 19(10):1105-19. PubMed ID: 23057821
[TBL] [Abstract][Full Text] [Related]
3. RNA secondary structures in a polymer-zeta model how foldings should be shaped for sparsification to establish a linear speedup.
Jin EY; Nebel ME
J Math Biol; 2016 Feb; 72(3):527-71. PubMed ID: 26001743
[TBL] [Abstract][Full Text] [Related]
4. SparseRNAfolD: optimized sparse RNA pseudoknot-free folding with dangle consideration.
Gray M; Will S; Jabbari H
Algorithms Mol Biol; 2024 Mar; 19(1):9. PubMed ID: 38433200
[TBL] [Abstract][Full Text] [Related]
5. Sparse RNA folding revisited: space-efficient minimum free energy structure prediction.
Will S; Jabbari H
Algorithms Mol Biol; 2016; 11():7. PubMed ID: 27110275
[TBL] [Abstract][Full Text] [Related]
6. Irreducibility in RNA structures.
Jin EY; Reidys CM
Bull Math Biol; 2010 Feb; 72(2):375-99. PubMed ID: 19890676
[TBL] [Abstract][Full Text] [Related]
7. Sparsification of RNA structure prediction including pseudoknots.
Möhl M; Salari R; Will S; Backofen R; Sahinalp SC
Algorithms Mol Biol; 2010 Dec; 5():39. PubMed ID: 21194463
[TBL] [Abstract][Full Text] [Related]
8. Combinatorics of γ-structures.
Han HS; Li TJ; Reidys CM
J Comput Biol; 2014 Aug; 21(8):591-608. PubMed ID: 24689708
[TBL] [Abstract][Full Text] [Related]
9. Generation of RNA pseudoknot structures with topological genus filtration.
Huang FW; Nebel ME; Reidys CM
Math Biosci; 2013 Oct; 245(2):216-25. PubMed ID: 23900061
[TBL] [Abstract][Full Text] [Related]
10. Statistics of canonical RNA pseudoknot structures.
Huang FW; Reidys CM
J Theor Biol; 2008 Aug; 253(3):570-8. PubMed ID: 18511081
[TBL] [Abstract][Full Text] [Related]
11. Knotty: efficient and accurate prediction of complex RNA pseudoknot structures.
Jabbari H; Wark I; Montemagno C; Will S
Bioinformatics; 2018 Nov; 34(22):3849-3856. PubMed ID: 29868872
[TBL] [Abstract][Full Text] [Related]
12. Combinatorics of RNA-RNA interaction.
Li TJ; Reidys CM
J Math Biol; 2012 Feb; 64(3):529-56. PubMed ID: 21541694
[TBL] [Abstract][Full Text] [Related]
13. Practicality and time complexity of a sparsified RNA folding algorithm.
Dimitrieva S; Bucher P
J Bioinform Comput Biol; 2012 Apr; 10(2):1241007. PubMed ID: 22809342
[TBL] [Abstract][Full Text] [Related]
14. An improved Four-Russians method and sparsified Four-Russians algorithm for RNA folding.
Frid Y; Gusfield D
Algorithms Mol Biol; 2016; 11():22. PubMed ID: 27499801
[TBL] [Abstract][Full Text] [Related]
15. Statistics of topological RNA structures.
Li TJX; Reidys CM
J Math Biol; 2017 Jun; 74(7):1793-1821. PubMed ID: 27853818
[TBL] [Abstract][Full Text] [Related]
16. Analysis of energy-based algorithms for RNA secondary structure prediction.
Hajiaghayi M; Condon A; Hoos HH
BMC Bioinformatics; 2012 Feb; 13():22. PubMed ID: 22296803
[TBL] [Abstract][Full Text] [Related]
17. Automated design of dynamic programming schemes for RNA folding with pseudoknots.
Marchand B; Will S; Berkemer SJ; Ponty Y; Bulteau L
Algorithms Mol Biol; 2023 Dec; 18(1):18. PubMed ID: 38041153
[TBL] [Abstract][Full Text] [Related]
18. The Rainbow Spectrum of RNA Secondary Structures.
Li TJX; Reidys CM
Bull Math Biol; 2018 Jun; 80(6):1514-1538. PubMed ID: 29541998
[TBL] [Abstract][Full Text] [Related]
19. RNAslider: a faster engine for consecutive windows folding and its application to the analysis of genomic folding asymmetry.
Horesh Y; Wexler Y; Lebenthal I; Ziv-Ukelson M; Unger R
BMC Bioinformatics; 2009 Mar; 10():76. PubMed ID: 19257906
[TBL] [Abstract][Full Text] [Related]
20. Fast and accurate search for non-coding RNA pseudoknot structures in genomes.
Huang Z; Wu Y; Robertson J; Feng L; Malmberg RL; Cai L
Bioinformatics; 2008 Oct; 24(20):2281-7. PubMed ID: 18687694
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]