283 related articles for article (PubMed ID: 23093610)
1. Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold.
Menelaou A; Marchini J
Bioinformatics; 2013 Jan; 29(1):84-91. PubMed ID: 23093610
[TBL] [Abstract][Full Text] [Related]
2. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
[TBL] [Abstract][Full Text] [Related]
3. Genotype calling and haplotyping in parent-offspring trios.
Chen W; Li B; Zeng Z; Sanna S; Sidore C; Busonero F; Kang HM; Li Y; Abecasis GR
Genome Res; 2013 Jan; 23(1):142-51. PubMed ID: 23064751
[TBL] [Abstract][Full Text] [Related]
4. A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels.
Faux P; Druet T
Genet Sel Evol; 2017 May; 49(1):46. PubMed ID: 28511677
[TBL] [Abstract][Full Text] [Related]
5. Phasing for medical sequencing using rare variants and large haplotype reference panels.
Sharp K; Kretzschmar W; Delaneau O; Marchini J
Bioinformatics; 2016 Jul; 32(13):1974-80. PubMed ID: 27153703
[TBL] [Abstract][Full Text] [Related]
6. A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing.
Zhang Y
Bioinformatics; 2013 Apr; 29(7):878-85. PubMed ID: 23407359
[TBL] [Abstract][Full Text] [Related]
7. Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
Zhang K; Zhi D
Bioinformatics; 2013 Oct; 29(19):2427-34. PubMed ID: 23943637
[TBL] [Abstract][Full Text] [Related]
8. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
Miller DB; Piccolo SR
BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
[TBL] [Abstract][Full Text] [Related]
9. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.
Ahn S; Vikalo H
BMC Bioinformatics; 2015 Jul; 16():223. PubMed ID: 26178880
[TBL] [Abstract][Full Text] [Related]
10. Genotype calling from next-generation sequencing data using haplotype information of reads.
Zhi D; Wu J; Liu N; Zhang K
Bioinformatics; 2012 Apr; 28(7):938-46. PubMed ID: 22285565
[TBL] [Abstract][Full Text] [Related]
11. An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data.
Wang Y; Lu J; Yu J; Gibbs RA; Yu F
Genome Res; 2013 May; 23(5):833-42. PubMed ID: 23296920
[TBL] [Abstract][Full Text] [Related]
12. iCall: a genotype-calling algorithm for rare, low-frequency and common variants on the Illumina exome array.
Zhou J; Tantoso E; Wong LP; Ong RT; Bei JX; Li Y; Liu J; Khor CC; Teo YY
Bioinformatics; 2014 Jun; 30(12):1714-20. PubMed ID: 24567545
[TBL] [Abstract][Full Text] [Related]
13. Comprehensive Assessment of Genotype Imputation Performance.
Shi S; Yuan N; Yang M; Du Z; Wang J; Sheng X; Wu J; Xiao J
Hum Hered; 2018; 83(3):107-116. PubMed ID: 30669139
[TBL] [Abstract][Full Text] [Related]
14. Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees.
Whalen A; Ros-Freixedes R; Wilson DL; Gorjanc G; Hickey JM
Genet Sel Evol; 2018 Dec; 50(1):67. PubMed ID: 30563452
[TBL] [Abstract][Full Text] [Related]
15. A computational method for genotype calling in family-based sequencing data.
Chang LC; Li B; Fang Z; Vrieze S; McGue M; Iacono WG; Tseng GC; Chen W
BMC Bioinformatics; 2016 Jan; 17():37. PubMed ID: 26772743
[TBL] [Abstract][Full Text] [Related]
16. Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel.
Delaneau O; Marchini J; ;
Nat Commun; 2014 Jun; 5():3934. PubMed ID: 25653097
[TBL] [Abstract][Full Text] [Related]
17. Genotype Imputation in Genome-Wide Association Studies.
Naj AC
Curr Protoc Hum Genet; 2019 Jun; 102(1):e84. PubMed ID: 31216114
[TBL] [Abstract][Full Text] [Related]
18. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data.
He D; Han B; Eskin E
J Comput Biol; 2013 Feb; 20(2):80-92. PubMed ID: 23383995
[TBL] [Abstract][Full Text] [Related]
19. Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel.
Huang J; Howie B; McCarthy S; Memari Y; Walter K; Min JL; Danecek P; Malerba G; Trabetti E; Zheng HF; ; Gambaro G; Richards JB; Durbin R; Timpson NJ; Marchini J; Soranzo N
Nat Commun; 2015 Sep; 6():8111. PubMed ID: 26368830
[TBL] [Abstract][Full Text] [Related]
20. Fast imputation using medium or low-coverage sequence data.
VanRaden PM; Sun C; O'Connell JR
BMC Genet; 2015 Jul; 16():82. PubMed ID: 26168789
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]