These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

658 related articles for article (PubMed ID: 23125362)

  • 1. Rfam 11.0: 10 years of RNA families.
    Burge SW; Daub J; Eberhardt R; Tate J; Barquist L; Nawrocki EP; Eddy SR; Gardner PP; Bateman A
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D226-32. PubMed ID: 23125362
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families.
    Kalvari I; Argasinska J; Quinones-Olvera N; Nawrocki EP; Rivas E; Eddy SR; Bateman A; Finn RD; Petrov AI
    Nucleic Acids Res; 2018 Jan; 46(D1):D335-D342. PubMed ID: 29112718
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Rfam: an RNA family database.
    Griffiths-Jones S; Bateman A; Marshall M; Khanna A; Eddy SR
    Nucleic Acids Res; 2003 Jan; 31(1):439-41. PubMed ID: 12520045
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Rfam 12.0: updates to the RNA families database.
    Nawrocki EP; Burge SW; Bateman A; Daub J; Eberhardt RY; Eddy SR; Floden EW; Gardner PP; Jones TA; Tate J; Finn RD
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D130-7. PubMed ID: 25392425
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Rfam: Wikipedia, clans and the "decimal" release.
    Gardner PP; Daub J; Tate J; Moore BL; Osuch IH; Griffiths-Jones S; Finn RD; Nawrocki EP; Kolbe DL; Eddy SR; Bateman A
    Nucleic Acids Res; 2011 Jan; 39(Database issue):D141-5. PubMed ID: 21062808
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Non-Coding RNA Analysis Using the Rfam Database.
    Kalvari I; Nawrocki EP; Argasinska J; Quinones-Olvera N; Finn RD; Bateman A; Petrov AI
    Curr Protoc Bioinformatics; 2018 Jun; 62(1):e51. PubMed ID: 29927072
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Rfam: annotating non-coding RNAs in complete genomes.
    Griffiths-Jones S; Moxon S; Marshall M; Khanna A; Eddy SR; Bateman A
    Nucleic Acids Res; 2005 Jan; 33(Database issue):D121-4. PubMed ID: 15608160
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Rfam: updates to the RNA families database.
    Gardner PP; Daub J; Tate JG; Nawrocki EP; Kolbe DL; Lindgreen S; Wilkinson AC; Finn RD; Griffiths-Jones S; Eddy SR; Bateman A
    Nucleic Acids Res; 2009 Jan; 37(Database issue):D136-40. PubMed ID: 18953034
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rfam 14: expanded coverage of metagenomic, viral and microRNA families.
    Kalvari I; Nawrocki EP; Ontiveros-Palacios N; Argasinska J; Lamkiewicz K; Marz M; Griffiths-Jones S; Toffano-Nioche C; Gautheret D; Weinberg Z; Rivas E; Eddy SR; Finn RD; Bateman A; Petrov AI
    Nucleic Acids Res; 2021 Jan; 49(D1):D192-D200. PubMed ID: 33211869
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Reconstruction of ancestral RNA sequences under multiple structural constraints.
    Tremblay-Savard O; Reinharz V; Waldispühl J
    BMC Genomics; 2016 Nov; 17(Suppl 10):862. PubMed ID: 28185557
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CMCompare webserver: comparing RNA families via covariance models.
    Eggenhofer F; Hofacker IL; Höner Zu Siederdissen C
    Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W499-503. PubMed ID: 23640335
    [TBL] [Abstract][Full Text] [Related]  

  • 12. rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA families.
    Sellés Vidal L; Ayala R; Stan GB; Ledesma-Amaro R
    PLoS One; 2021; 16(1):e0245280. PubMed ID: 33449976
    [TBL] [Abstract][Full Text] [Related]  

  • 13. NONCODE v2.0: decoding the non-coding.
    He S; Liu C; Skogerbø G; Zhao H; Wang J; Liu T; Bai B; Zhao Y; Chen R
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D170-2. PubMed ID: 18000000
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Rfam: annotating families of non-coding RNA sequences.
    Daub J; Eberhardt RY; Tate JG; Burge SW
    Methods Mol Biol; 2015; 1269():349-63. PubMed ID: 25577390
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Annotating non-coding RNAs with Rfam.
    Griffiths-Jones S
    Curr Protoc Bioinformatics; 2005 Apr; Chapter 12():12.5.1-12.5.12. PubMed ID: 18428745
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Inferring noncoding RNA families and classes by means of genome-scale structure-based clustering.
    Will S; Reiche K; Hofacker IL; Stadler PF; Backofen R
    PLoS Comput Biol; 2007 Apr; 3(4):e65. PubMed ID: 17432929
    [TBL] [Abstract][Full Text] [Related]  

  • 17. RNAcentral 2021: secondary structure integration, improved sequence search and new member databases.
    RNAcentral Consortium
    Nucleic Acids Res; 2021 Jan; 49(D1):D212-D220. PubMed ID: 33106848
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Search for 5'-leader regulatory RNA structures based on gene annotation aided by the RiboGap database.
    Naghdi MR; Smail K; Wang JX; Wade F; Breaker RR; Perreault J
    Methods; 2017 Mar; 117():3-13. PubMed ID: 28279853
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The Pfam protein families database.
    Finn RD; Tate J; Mistry J; Coggill PC; Sammut SJ; Hotz HR; Ceric G; Forslund K; Eddy SR; Sonnhammer EL; Bateman A
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D281-8. PubMed ID: 18039703
    [TBL] [Abstract][Full Text] [Related]  

  • 20. fRNAdb: a platform for mining/annotating functional RNA candidates from non-coding RNA sequences.
    Kin T; Yamada K; Terai G; Okida H; Yoshinari Y; Ono Y; Kojima A; Kimura Y; Komori T; Asai K
    Nucleic Acids Res; 2007 Jan; 35(Database issue):D145-8. PubMed ID: 17099231
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 33.