These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

254 related articles for article (PubMed ID: 23139645)

  • 1. Exploring residue component contributions to dynamical network models of allostery.
    Vanwart AT; Eargle J; Luthey-Schulten Z; Amaro RE
    J Chem Theory Comput; 2012 Aug; 8(8):2949-2961. PubMed ID: 23139645
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Distinct allosteric pathways in imidazole glycerol phosphate synthase from yeast and bacteria.
    Maschietto F; Gheeraert A; Piazzi A; Batista VS; Rivalta I
    Biophys J; 2022 Jan; 121(1):119-130. PubMed ID: 34864045
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Residue-Residue Contact Changes during Functional Processes Define Allosteric Communication Pathways.
    Yao XQ; Hamelberg D
    J Chem Theory Comput; 2022 Feb; 18(2):1173-1187. PubMed ID: 35048691
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A study on allosteric communication in U1A-snRNA binding interactions: network analysis combined with molecular dynamics data.
    Shao Q; Gong W; Li C
    Biophys Chem; 2020 Sep; 264():106393. PubMed ID: 32653695
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Computational Analysis of Residue Interaction Networks and Coevolutionary Relationships in the Hsp70 Chaperones: A Community-Hopping Model of Allosteric Regulation and Communication.
    Stetz G; Verkhivker GM
    PLoS Comput Biol; 2017 Jan; 13(1):e1005299. PubMed ID: 28095400
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Allosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.
    Allain A; Chauvot de Beauchêne I; Langenfeld F; Guarracino Y; Laine E; Tchertanov L
    Faraday Discuss; 2014; 169():303-21. PubMed ID: 25340971
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Data-driven computational analysis of allosteric proteins by exploring protein dynamics, residue coevolution and residue interaction networks.
    Astl L; Verkhivker GM
    Biochim Biophys Acta Gen Subj; 2019 Jul; ():. PubMed ID: 31330173
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Exploring Molecular Mechanisms of Paradoxical Activation in the BRAF Kinase Dimers: Atomistic Simulations of Conformational Dynamics and Modeling of Allosteric Communication Networks and Signaling Pathways.
    Tse A; Verkhivker GM
    PLoS One; 2016; 11(11):e0166583. PubMed ID: 27861609
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
    Kalescky R; Zhou H; Liu J; Tao P
    PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Eigenvector centrality for characterization of protein allosteric pathways.
    Negre CFA; Morzan UN; Hendrickson HP; Pal R; Lisi GP; Loria JP; Rivalta I; Ho J; Batista VS
    Proc Natl Acad Sci U S A; 2018 Dec; 115(52):E12201-E12208. PubMed ID: 30530700
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Time Evolution of the Millisecond Allosteric Activation of Imidazole Glycerol Phosphate Synthase.
    Calvó-Tusell C; Maria-Solano MA; Osuna S; Feixas F
    J Am Chem Soc; 2022 Apr; 144(16):7146-7159. PubMed ID: 35412310
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Community Network Analysis of Allosteric Proteins.
    Rivalta I; Batista VS
    Methods Mol Biol; 2021; 2253():137-151. PubMed ID: 33315222
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Change in allosteric network affects binding affinities of PDZ domains: analysis through perturbation response scanning.
    Gerek ZN; Ozkan SB
    PLoS Comput Biol; 2011 Oct; 7(10):e1002154. PubMed ID: 21998559
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Residue-Level Allostery Propagates through the Effective Coarse-Grained Hessian.
    Lake PT; Davidson RB; Klem H; Hocky GM; McCullagh M
    J Chem Theory Comput; 2020 May; 16(5):3385-3395. PubMed ID: 32251581
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Exploring Allosteric Pathways of a V-Type Enzyme with Dynamical Perturbation Networks.
    Gheeraert A; Pacini L; Batista VS; Vuillon L; Lesieur C; Rivalta I
    J Phys Chem B; 2019 Apr; 123(16):3452-3461. PubMed ID: 30943726
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Dynamical network of residue-residue contacts reveals coupled allosteric effects in recognition, catalysis, and mutation.
    Doshi U; Holliday MJ; Eisenmesser EZ; Hamelberg D
    Proc Natl Acad Sci U S A; 2016 Apr; 113(17):4735-40. PubMed ID: 27071107
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Robust Determination of Protein Allosteric Signaling Pathways.
    Botello-Smith WM; Luo Y
    J Chem Theory Comput; 2019 Apr; 15(4):2116-2126. PubMed ID: 30836000
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Contact rearrangements form coupled networks from local motions in allosteric proteins.
    Daily MD; Upadhyaya TJ; Gray JJ
    Proteins; 2008 Apr; 71(1):455-66. PubMed ID: 17957766
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Glutamine Hydrolysis by Imidazole Glycerol Phosphate Synthase Displays Temperature Dependent Allosteric Activation.
    Lisi GP; Currier AA; Loria JP
    Front Mol Biosci; 2018; 5():4. PubMed ID: 29468164
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
    Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J
    J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.