These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
3. A bioinformatics pipeline for high-throughput microbial multilocus sequence typing (MLST) analyses. Platt S; Pichon B; George R; Green J Clin Microbiol Infect; 2006 Nov; 12(11):1144-6. PubMed ID: 17002618 [TBL] [Abstract][Full Text] [Related]
4. High Resolution Melting as a rapid, reliable, accurate and cost-effective emerging tool for genotyping pathogenic bacteria and enhancing molecular epidemiological surveillance: a comprehensive review of the literature. Tamburro M; Ripabelli G Ann Ig; 2017; 29(4):293-316. PubMed ID: 28569339 [TBL] [Abstract][Full Text] [Related]
7. MentaLiST - A fast MLST caller for large MLST schemes. Feijao P; Yao HT; Fornika D; Gardy J; Hsiao W; Chauve C; Chindelevitch L Microb Genom; 2018 Feb; 4(2):. PubMed ID: 29319471 [TBL] [Abstract][Full Text] [Related]
8. Efficient, Cost-Effective, High-Throughput, Multilocus Sequencing Typing (MLST) Method, NGMLST, and the Analytical Software Program MLSTEZ. Chen Y; Perfect JR Methods Mol Biol; 2017; 1492():197-202. PubMed ID: 27822866 [TBL] [Abstract][Full Text] [Related]
9. Rapid and accurate SNP genotyping of clonal bacterial pathogens with BioHansel. Labbé G; Kruczkiewicz P; Robertson J; Mabon P; Schonfeld J; Kein D; Rankin MA; Gopez M; Hole D; Son D; Knox N; Laing CR; Bessonov K; Taboada EN; Yoshida C; Ziebell K; Nichani A; Johnson RP; Van Domselaar G; Nash JHE Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34554082 [TBL] [Abstract][Full Text] [Related]
10. Guidelines for high-resolution genotyping of Chlamydia trachomatis using multilocus sequence analysis. Christerson L; Herrmann B Methods Mol Biol; 2012; 903():51-64. PubMed ID: 22782811 [TBL] [Abstract][Full Text] [Related]
11. Identification of highly variable sequence fragments in unmapped reads for rapid bacterial genotyping. Nykrynova M; Barton V; Bezdicek M; Lengerova M; Skutkova H BMC Genomics; 2022 Dec; 23(Suppl 3):445. PubMed ID: 36581824 [TBL] [Abstract][Full Text] [Related]
12. Automated pneumococcal MLST using liquid-handling robotics and a capillary DNA sequencer. Jefferies J; Clarke SC; Diggle MA; Smith A; Dowson C; Mitchell T Mol Biotechnol; 2003 Jul; 24(3):303-8. PubMed ID: 12777696 [TBL] [Abstract][Full Text] [Related]
13. Multilocus Sequence Typing (MLST) of Chlamydiales. Jelocnik M; Polkinghorne A; Pannekoek Y Methods Mol Biol; 2019; 2042():69-86. PubMed ID: 31385271 [TBL] [Abstract][Full Text] [Related]
14. MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples. Zolfo M; Tett A; Jousson O; Donati C; Segata N Nucleic Acids Res; 2017 Jan; 45(2):e7. PubMed ID: 27651451 [TBL] [Abstract][Full Text] [Related]
15. Comparison of four methods, including semi-automated rep-PCR, for the typing of vancomycin-resistant Enterococcus faecium. Bourdon N; Lemire A; Fines-Guyon M; Auzou M; Périchon B; Courvalin P; Cattoir V; Leclercq R J Microbiol Methods; 2011 Jan; 84(1):74-80. PubMed ID: 21062634 [TBL] [Abstract][Full Text] [Related]
16. Use of the Oxford Nanopore MinION sequencer for MLST genotyping of vancomycin-resistant enterococci. Tarumoto N; Sakai J; Sujino K; Yamaguchi T; Ohta M; Yamagishi J; Runtuwene LR; Murakami T; Suzuki Y; Maeda T; Maesaki S J Hosp Infect; 2017 Jul; 96(3):296-298. PubMed ID: 28389092 [No Abstract] [Full Text] [Related]
17. The utility of high-resolution melting analysis of SNP nucleated PCR amplicons--an MLST based Staphylococcus aureus typing scheme. Lilliebridge RA; Tong SY; Giffard PM; Holt DC PLoS One; 2011; 6(6):e19749. PubMed ID: 21731606 [TBL] [Abstract][Full Text] [Related]
18. Rapid and Simple Universal Caméléna F; Birgy A; Smail Y; Courroux C; Mariani-Kurkdjian P; Le Hello S; Bonacorsi S; Bidet P Appl Environ Microbiol; 2019 Mar; 85(6):. PubMed ID: 30610078 [TBL] [Abstract][Full Text] [Related]
19. A modified multilocus sequence typing protocol to genotype Kingella kingae from oropharyngeal swabs without bacterial isolation. El Houmami N; Bzdrenga J; Pons JC; Minodier P; Durand GA; Oubraham A; Ceroni D; Yagupsky P; Raoult D; Bidet P; Fournier PE BMC Microbiol; 2017 Sep; 17(1):200. PubMed ID: 28946848 [TBL] [Abstract][Full Text] [Related]
20. Identification of bacterial isolates from a public hospital in Australia using complexity-reduced genotyping. Talamantes-Becerra B; Carling J; Kennedy K; Gahan ME; Georges A J Microbiol Methods; 2019 May; 160():11-19. PubMed ID: 30894330 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]