These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

437 related articles for article (PubMed ID: 23180789)

  • 1. The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.
    Hastings J; de Matos P; Dekker A; Ennis M; Harsha B; Kale N; Muthukrishnan V; Owen G; Turner S; Williams M; Steinbeck C
    Nucleic Acids Res; 2013 Jan; 41(Database issue):D456-63. PubMed ID: 23180789
    [TBL] [Abstract][Full Text] [Related]  

  • 2. ChEBI: a database and ontology for chemical entities of biological interest.
    Degtyarenko K; de Matos P; Ennis M; Hastings J; Zbinden M; McNaught A; Alcántara R; Darsow M; Guedj M; Ashburner M
    Nucleic Acids Res; 2008 Jan; 36(Database issue):D344-50. PubMed ID: 17932057
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.
    Hill DP; Adams N; Bada M; Batchelor C; Berardini TZ; Dietze H; Drabkin HJ; Ennis M; Foulger RE; Harris MA; Hastings J; Kale NS; de Matos P; Mungall CJ; Owen G; Roncaglia P; Steinbeck C; Turner S; Lomax J
    BMC Genomics; 2013 Jul; 14():513. PubMed ID: 23895341
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ChEBI in 2016: Improved services and an expanding collection of metabolites.
    Hastings J; Owen G; Dekker A; Ennis M; Kale N; Muthukrishnan V; Turner S; Swainston N; Mendes P; Steinbeck C
    Nucleic Acids Res; 2016 Jan; 44(D1):D1214-9. PubMed ID: 26467479
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BiNChE: a web tool and library for chemical enrichment analysis based on the ChEBI ontology.
    Moreno P; Beisken S; Harsha B; Muthukrishnan V; Tudose I; Dekker A; Dornfeldt S; Taruttis F; Grosse I; Hastings J; Neumann S; Steinbeck C
    BMC Bioinformatics; 2015 Feb; 16(1):56. PubMed ID: 25879798
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Chemical Entities of Biological Interest: an update.
    de Matos P; Alcántara R; Dekker A; Ennis M; Hastings J; Haug K; Spiteri I; Turner S; Steinbeck C
    Nucleic Acids Res; 2010 Jan; 38(Database issue):D249-54. PubMed ID: 19854951
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The Ontology for Biomedical Investigations.
    Bandrowski A; Brinkman R; Brochhausen M; Brush MH; Bug B; Chibucos MC; Clancy K; Courtot M; Derom D; Dumontier M; Fan L; Fostel J; Fragoso G; Gibson F; Gonzalez-Beltran A; Haendel MA; He Y; Heiskanen M; Hernandez-Boussard T; Jensen M; Lin Y; Lister AL; Lord P; Malone J; Manduchi E; McGee M; Morrison N; Overton JA; Parkinson H; Peters B; Rocca-Serra P; Ruttenberg A; Sansone SA; Scheuermann RH; Schober D; Smith B; Soldatova LN; Stoeckert CJ; Taylor CF; Torniai C; Turner JA; Vita R; Whetzel PL; Zheng J
    PLoS One; 2016; 11(4):e0154556. PubMed ID: 27128319
    [TBL] [Abstract][Full Text] [Related]  

  • 8. MicrO: an ontology of phenotypic and metabolic characters, assays, and culture media found in prokaryotic taxonomic descriptions.
    Blank CE; Cui H; Moore LR; Walls RL
    J Biomed Semantics; 2016; 7():18. PubMed ID: 27076900
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A rule-based ontological framework for the classification of molecules.
    Magka D; Krötzsch M; Horrocks I
    J Biomed Semantics; 2014; 5():17. PubMed ID: 24735706
    [TBL] [Abstract][Full Text] [Related]  

  • 10. OntoQuery: easy-to-use web-based OWL querying.
    Tudose I; Hastings J; Muthukrishnan V; Owen G; Turner S; Dekker A; Kale N; Ennis M; Steinbeck C
    Bioinformatics; 2013 Nov; 29(22):2955-7. PubMed ID: 24008420
    [TBL] [Abstract][Full Text] [Related]  

  • 11. libChEBI: an API for accessing the ChEBI database.
    Swainston N; Hastings J; Dekker A; Muthukrishnan V; May J; Steinbeck C; Mendes P
    J Cheminform; 2016; 8():11. PubMed ID: 26933452
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Identification of OBO nonalignments and its implications for OBO enrichment.
    Bada M; Hunter L
    Bioinformatics; 2008 Jun; 24(12):1448-55. PubMed ID: 18463117
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Updates in Rhea--a manually curated resource of biochemical reactions.
    Morgat A; Axelsen KB; Lombardot T; Alcántara R; Aimo L; Zerara M; Niknejad A; Belda E; Hyka-Nouspikel N; Coudert E; Redaschi N; Bougueleret L; Steinbeck C; Xenarios I; Bridge A
    Nucleic Acids Res; 2015 Jan; 43(Database issue):D459-64. PubMed ID: 25332395
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chebifier: automating semantic classification in ChEBI to accelerate data-driven discovery.
    Glauer M; Neuhaus F; Flügel S; Wosny M; Mossakowski T; Memariani A; Schwerdt J; Hastings J
    Digit Discov; 2024 May; 3(5):896-907. PubMed ID: 38756223
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A drug target slim: using gene ontology and gene ontology annotations to navigate protein-ligand target space in ChEMBL.
    Mutowo P; Bento AP; Dedman N; Gaulton A; Hersey A; Lomax J; Overington JP
    J Biomed Semantics; 2016 Sep; 7(1):59. PubMed ID: 27678076
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology.
    Camon E; Magrane M; Barrell D; Lee V; Dimmer E; Maslen J; Binns D; Harte N; Lopez R; Apweiler R
    Nucleic Acids Res; 2004 Jan; 32(Database issue):D262-6. PubMed ID: 14681408
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Self-organizing ontology of biochemically relevant small molecules.
    Chepelev LL; Hastings J; Ennis M; Steinbeck C; Dumontier M
    BMC Bioinformatics; 2012 Jan; 13():3. PubMed ID: 22221313
    [TBL] [Abstract][Full Text] [Related]  

  • 18. OntologyWidget - a reusable, embeddable widget for easily locating ontology terms.
    Beauheim CC; Wymore F; Nitzberg M; Zachariah ZK; Jin H; Skene JH; Ball CA; Sherlock G
    BMC Bioinformatics; 2007 Sep; 8():338. PubMed ID: 17854506
    [TBL] [Abstract][Full Text] [Related]  

  • 19. GOLEM: an interactive graph-based gene-ontology navigation and analysis tool.
    Sealfon RS; Hibbs MA; Huttenhower C; Myers CL; Troyanskaya OG
    BMC Bioinformatics; 2006 Oct; 7():443. PubMed ID: 17032457
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The ChEMBL database in 2017.
    Gaulton A; Hersey A; Nowotka M; Bento AP; Chambers J; Mendez D; Mutowo P; Atkinson F; Bellis LJ; Cibrián-Uhalte E; Davies M; Dedman N; Karlsson A; Magariños MP; Overington JP; Papadatos G; Smit I; Leach AR
    Nucleic Acids Res; 2017 Jan; 45(D1):D945-D954. PubMed ID: 27899562
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.