144 related articles for article (PubMed ID: 23184675)
1. MirPlex: a tool for identifying miRNAs in high-throughput sRNA datasets without a genome.
Mapleson D; Moxon S; Dalmay T; Moulton V
J Exp Zool B Mol Dev Evol; 2013 Jan; 320(1):47-56. PubMed ID: 23184675
[TBL] [Abstract][Full Text] [Related]
2. BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.
Moraga C; Sanchez E; Ferrarini MG; Gutierrez RA; Vidal EA; Sagot MF
Gigascience; 2022 Oct; 11():. PubMed ID: 36283679
[TBL] [Abstract][Full Text] [Related]
3. Mirinho: An efficient and general plant and animal pre-miRNA predictor for genomic and deep sequencing data.
Higashi S; Fournier C; Gautier C; Gaspin C; Sagot MF
BMC Bioinformatics; 2015 May; 16():179. PubMed ID: 26022464
[TBL] [Abstract][Full Text] [Related]
4. Mirnovo: genome-free prediction of microRNAs from small RNA sequencing data and single-cells using decision forests.
Vitsios DM; Kentepozidou E; Quintais L; Benito-Gutiérrez E; van Dongen S; Davis MP; Enright AJ
Nucleic Acids Res; 2017 Dec; 45(21):e177. PubMed ID: 29036314
[TBL] [Abstract][Full Text] [Related]
5. The UEA Small RNA Workbench: A Suite of Computational Tools for Small RNA Analysis.
Mohorianu I; Stocks MB; Applegate CS; Folkes L; Moulton V
Methods Mol Biol; 2017; 1580():193-224. PubMed ID: 28439835
[TBL] [Abstract][Full Text] [Related]
6. sRIS: A Small RNA Illustration System for Plant Next-Generation Sequencing Data Analysis.
Tseng KC; Chiang-Hsieh YF; Pai H; Wu NY; Zheng HQ; Chow CN; Lee TY; Chang SB; Lin NS; Chang WC
Plant Cell Physiol; 2020 Jun; 61(6):1204-1212. PubMed ID: 32181856
[TBL] [Abstract][Full Text] [Related]
7. Dicer-Dependent Biogenesis of Small RNAs and Evidence for MicroRNA-Like RNAs in the Penicillin Producing Fungus Penicillium chrysogenum.
Dahlmann TA; Kück U
PLoS One; 2015; 10(5):e0125989. PubMed ID: 25955857
[TBL] [Abstract][Full Text] [Related]
8. Asymmetric purine-pyrimidine distribution in cellular small RNA population of papaya.
Aryal R; Yang X; Yu Q; Sunkar R; Li L; Ming R
BMC Genomics; 2012 Dec; 13():682. PubMed ID: 23216749
[TBL] [Abstract][Full Text] [Related]
9. miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.
Paicu C; Mohorianu I; Stocks M; Xu P; Coince A; Billmeier M; Dalmay T; Moulton V; Moxon S
Bioinformatics; 2017 Aug; 33(16):2446-2454. PubMed ID: 28407097
[TBL] [Abstract][Full Text] [Related]
10. Sex specific expression and distribution of small RNAs in papaya.
Aryal R; Jagadeeswaran G; Zheng Y; Yu Q; Sunkar R; Ming R
BMC Genomics; 2014 Jan; 15(1):20. PubMed ID: 24410969
[TBL] [Abstract][Full Text] [Related]
11. iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.
Giurato G; De Filippo MR; Rinaldi A; Hashim A; Nassa G; Ravo M; Rizzo F; Tarallo R; Weisz A
BMC Bioinformatics; 2013 Dec; 14():362. PubMed ID: 24330401
[TBL] [Abstract][Full Text] [Related]
12. Systematic analysis of small RNAs associated with human mitochondria by deep sequencing: detailed analysis of mitochondrial associated miRNA.
Sripada L; Tomar D; Prajapati P; Singh R; Singh AK; Singh R
PLoS One; 2012; 7(9):e44873. PubMed ID: 22984580
[TBL] [Abstract][Full Text] [Related]
13. Discovery and characterization of medaka miRNA genes by next generation sequencing platform.
Li SC; Chan WC; Ho MR; Tsai KW; Hu LY; Lai CH; Hsu CN; Hwang PP; Lin WC
BMC Genomics; 2010 Dec; 11 Suppl 4(Suppl 4):S8. PubMed ID: 21143817
[TBL] [Abstract][Full Text] [Related]
14. A non-biased framework for the annotation and classification of the non-miRNA small RNA transcriptome.
Pantano L; Estivill X; Martí E
Bioinformatics; 2011 Nov; 27(22):3202-3. PubMed ID: 21976421
[TBL] [Abstract][Full Text] [Related]
15. Small RNA-seq reveals novel regulatory components for apomixis in Paspalum notatum.
Ortiz JPA; Leblanc O; Rohr C; Grisolia M; Siena LA; Podio M; Colono C; Azzaro C; Pessino SC
BMC Genomics; 2019 Jun; 20(1):487. PubMed ID: 31195966
[TBL] [Abstract][Full Text] [Related]
16. sRNATargetDigger: A bioinformatics software for bidirectional identification of sRNA-target pairs with co-regulatory sRNAs information.
Ye X; Yang Z; Jiang Y; Yu L; Guo R; Meng Y; Shao C
PLoS One; 2020; 15(12):e0244480. PubMed ID: 33370386
[TBL] [Abstract][Full Text] [Related]
17. Small RNA expression from viruses, bacteria and human miRNAs in colon cancer tissue and its association with microsatellite instability and tumor location.
Mjelle R; Sjursen W; Thommesen L; Sætrom P; Hofsli E
BMC Cancer; 2019 Feb; 19(1):161. PubMed ID: 30786859
[TBL] [Abstract][Full Text] [Related]
18. Databases and resources for human small non-coding RNAs.
Agirre E; Eyras E
Hum Genomics; 2011 Mar; 5(3):192-9. PubMed ID: 21504869
[TBL] [Abstract][Full Text] [Related]
19. A survey of software tools for microRNA discovery and characterization using RNA-seq.
Bortolomeazzi M; Gaffo E; Bortoluzzi S
Brief Bioinform; 2019 May; 20(3):918-930. PubMed ID: 29126230
[TBL] [Abstract][Full Text] [Related]
20. Improved Placement of Multi-mapping Small RNAs.
Johnson NR; Yeoh JM; Coruh C; Axtell MJ
G3 (Bethesda); 2016 Jul; 6(7):2103-11. PubMed ID: 27175019
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
