101 related articles for article (PubMed ID: 23192548)
1. Gene Set/Pathway enrichment analysis.
Hung JH
Methods Mol Biol; 2013; 939():201-13. PubMed ID: 23192548
[TBL] [Abstract][Full Text] [Related]
2. Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.
Maruschke M; Reuter D; Koczan D; Hakenberg OW; Thiesen HJ
BJU Int; 2011 Jul; 108(2 Pt 2):E29-35. PubMed ID: 21435154
[TBL] [Abstract][Full Text] [Related]
3. Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles.
Edelman E; Porrello A; Guinney J; Balakumaran B; Bild A; Febbo PG; Mukherjee S
Bioinformatics; 2006 Jul; 22(14):e108-16. PubMed ID: 16873460
[TBL] [Abstract][Full Text] [Related]
4. A Markov random field model for network-based analysis of genomic data.
Wei Z; Li H
Bioinformatics; 2007 Jun; 23(12):1537-44. PubMed ID: 17483504
[TBL] [Abstract][Full Text] [Related]
5. MILANO--custom annotation of microarray results using automatic literature searches.
Rubinstein R; Simon I
BMC Bioinformatics; 2005 Jan; 6():12. PubMed ID: 15661078
[TBL] [Abstract][Full Text] [Related]
6. How to decide which are the most pertinent overly-represented features during gene set enrichment analysis.
Barriot R; Sherman DJ; Dutour I
BMC Bioinformatics; 2007 Sep; 8():332. PubMed ID: 17848190
[TBL] [Abstract][Full Text] [Related]
7. Mining patterns in disease classification forests.
Hu H
J Biomed Inform; 2010 Oct; 43(5):820-7. PubMed ID: 20601123
[TBL] [Abstract][Full Text] [Related]
8. Reconstructing signal transduction pathways: challenges and opportunities.
Levine AJ; Hu W; Feng Z; Gil G
Ann N Y Acad Sci; 2007 Dec; 1115():32-50. PubMed ID: 17934060
[TBL] [Abstract][Full Text] [Related]
9. Computational methods for analysis of cellular functions and pathways collectively targeted by differentially expressed microRNA.
Gusev Y
Methods; 2008 Jan; 44(1):61-72. PubMed ID: 18158134
[TBL] [Abstract][Full Text] [Related]
10. Employing gene set top scoring pairs to identify deregulated pathway-signatures in dilated cardiomyopathy from integrated microarray gene expression data.
Tan AC
Methods Mol Biol; 2012; 802():345-61. PubMed ID: 22130892
[TBL] [Abstract][Full Text] [Related]
11. Key genes and pathways in thyroid cancer based on gene set enrichment analysis.
He W; Qi B; Zhou Q; Lu C; Huang Q; Xian L; Chen M
Oncol Rep; 2013 Sep; 30(3):1391-7. PubMed ID: 23784086
[TBL] [Abstract][Full Text] [Related]
12. Pathway level analysis by augmenting activities of transcription factor target genes.
Jung H; Lee E; Kim JW; Lee D
IET Syst Biol; 2009 Nov; 3(6):534-42. PubMed ID: 19947779
[TBL] [Abstract][Full Text] [Related]
13. Key pathways involved in prostate cancer based on gene set enrichment analysis and meta analysis.
Ning QY; Wu JZ; Zang N; Liang J; Hu YL; Mo ZN
Genet Mol Res; 2011 Dec; 10(4):3856-87. PubMed ID: 22194210
[TBL] [Abstract][Full Text] [Related]
14. Systems-based biological concordance and predictive reproducibility of gene set discovery methods in cardiovascular disease.
Azuaje F; Zheng H; Camargo A; Wang H
J Biomed Inform; 2011 Aug; 44(4):637-47. PubMed ID: 21315182
[TBL] [Abstract][Full Text] [Related]
15. GO-function: deriving biologically relevant functions from statistically significant functions.
Wang J; Zhou X; Zhu J; Gu Y; Zhao W; Zou J; Guo Z
Brief Bioinform; 2012 Mar; 13(2):216-27. PubMed ID: 21705405
[TBL] [Abstract][Full Text] [Related]
16. Ranking genes by their co-expression to subsets of pathway members.
Adler P; Peterson H; Agius P; Reimand J; Vilo J
Ann N Y Acad Sci; 2009 Mar; 1158():1-13. PubMed ID: 19348627
[TBL] [Abstract][Full Text] [Related]
17. DEEP--a tool for differential expression effector prediction.
Degenhardt J; Haubrock M; Dönitz J; Wingender E; Crass T
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W619-24. PubMed ID: 17584786
[TBL] [Abstract][Full Text] [Related]
18. Reverse engineering cellular networks.
Margolin AA; Wang K; Lim WK; Kustagi M; Nemenman I; Califano A
Nat Protoc; 2006; 1(2):662-71. PubMed ID: 17406294
[TBL] [Abstract][Full Text] [Related]
19. Computational analysis of microRNA function in heart development.
Liu G; Ding M; Chen J; Huang J; Wang H; Jing Q; Shen B
Acta Biochim Biophys Sin (Shanghai); 2010 Sep; 42(9):662-70. PubMed ID: 20716610
[TBL] [Abstract][Full Text] [Related]
20. Elucidating the altered transcriptional programs in breast cancer using independent component analysis.
Teschendorff AE; Journée M; Absil PA; Sepulchre R; Caldas C
PLoS Comput Biol; 2007 Aug; 3(8):e161. PubMed ID: 17708679
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
