269 related articles for article (PubMed ID: 23203880)
1. YM500: a small RNA sequencing (smRNA-seq) database for microRNA research.
Cheng WC; Chung IF; Huang TS; Chang ST; Sun HJ; Tsai CF; Liang ML; Wong TT; Wang HW
Nucleic Acids Res; 2013 Jan; 41(Database issue):D285-94. PubMed ID: 23203880
[TBL] [Abstract][Full Text] [Related]
2. YM500v2: a small RNA sequencing (smRNA-seq) database for human cancer miRNome research.
Cheng WC; Chung IF; Tsai CF; Huang TS; Chen CY; Wang SC; Chang TY; Sun HJ; Chao JY; Cheng CC; Wu CW; Wang HW
Nucleic Acids Res; 2015 Jan; 43(Database issue):D862-7. PubMed ID: 25398902
[TBL] [Abstract][Full Text] [Related]
3. YM500v3: a database for small RNA sequencing in human cancer research.
Chung IF; Chang SJ; Chen CY; Liu SH; Li CY; Chan CH; Shih CC; Cheng WC
Nucleic Acids Res; 2017 Jan; 45(D1):D925-D931. PubMed ID: 27899625
[TBL] [Abstract][Full Text] [Related]
4. isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation.
Urgese G; Paciello G; Acquaviva A; Ficarra E
BMC Bioinformatics; 2016 Mar; 17():148. PubMed ID: 27036505
[TBL] [Abstract][Full Text] [Related]
5. IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner.
Vasconcelos AM; Carmo MB; Ferreira B; Viegas I; Gama-Carvalho M; Ferreira A; Amaral AJ
BMC Bioinformatics; 2021 Feb; 22(1):37. PubMed ID: 33522913
[TBL] [Abstract][Full Text] [Related]
6. starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data.
Yang JH; Li JH; Shao P; Zhou H; Chen YQ; Qu LH
Nucleic Acids Res; 2011 Jan; 39(Database issue):D202-9. PubMed ID: 21037263
[TBL] [Abstract][Full Text] [Related]
7. miRNEST database: an integrative approach in microRNA search and annotation.
Szcześniak MW; Deorowicz S; Gapski J; Kaczyński Ł; Makalowska I
Nucleic Acids Res; 2012 Jan; 40(Database issue):D198-204. PubMed ID: 22135287
[TBL] [Abstract][Full Text] [Related]
8. MiRGator v3.0: a microRNA portal for deep sequencing, expression profiling and mRNA targeting.
Cho S; Jang I; Jun Y; Yoon S; Ko M; Kwon Y; Choi I; Chang H; Ryu D; Lee B; Kim VN; Kim W; Lee S
Nucleic Acids Res; 2013 Jan; 41(Database issue):D252-7. PubMed ID: 23193297
[TBL] [Abstract][Full Text] [Related]
9. DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.
Yang JH; Qu LH
Methods Mol Biol; 2012; 822():233-48. PubMed ID: 22144203
[TBL] [Abstract][Full Text] [Related]
10. Comprehensive analysis of human small RNA sequencing data provides insights into expression profiles and miRNA editing.
Gong J; Wu Y; Zhang X; Liao Y; Sibanda VL; Liu W; Guo AY
RNA Biol; 2014; 11(11):1375-85. PubMed ID: 25692236
[TBL] [Abstract][Full Text] [Related]
11. A computational approach for identifying microRNA-target interactions using high-throughput CLIP and PAR-CLIP sequencing.
Chou CH; Lin FM; Chou MT; Hsu SD; Chang TH; Weng SL; Shrestha S; Hsiao CC; Hung JH; Huang HD
BMC Genomics; 2013; 14 Suppl 1(Suppl 1):S2. PubMed ID: 23368412
[TBL] [Abstract][Full Text] [Related]
12. 3'IsomiR Species Composition Affects Reliable Quantification of miRNA/isomiR Variants by Poly(A) RT-qPCR: Impact on Small RNA-Seq Profiling Validation.
Ferre A; Santiago L; Sánchez-Herrero JF; López-Rodrigo O; Sánchez-Curbelo J; Sumoy L; Bassas L; Larriba S
Int J Mol Sci; 2023 Oct; 24(20):. PubMed ID: 37895116
[TBL] [Abstract][Full Text] [Related]
13. miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions.
Hsu SD; Tseng YT; Shrestha S; Lin YL; Khaleel A; Chou CH; Chu CF; Huang HY; Lin CM; Ho SY; Jian TY; Lin FM; Chang TH; Weng SL; Liao KW; Liao IE; Liu CC; Huang HD
Nucleic Acids Res; 2014 Jan; 42(Database issue):D78-85. PubMed ID: 24304892
[TBL] [Abstract][Full Text] [Related]
14. CPSS: a computational platform for the analysis of small RNA deep sequencing data.
Zhang Y; Xu B; Yang Y; Ban R; Zhang H; Jiang X; Cooke HJ; Xue Y; Shi Q
Bioinformatics; 2012 Jul; 28(14):1925-7. PubMed ID: 22576177
[TBL] [Abstract][Full Text] [Related]
15. The use of high-throughput sequencing methods for plant microRNA research.
Ma X; Tang Z; Qin J; Meng Y
RNA Biol; 2015; 12(7):709-19. PubMed ID: 26016494
[TBL] [Abstract][Full Text] [Related]
16. PMRD: plant microRNA database.
Zhang Z; Yu J; Li D; Zhang Z; Liu F; Zhou X; Wang T; Ling Y; Su Z
Nucleic Acids Res; 2010 Jan; 38(Database issue):D806-13. PubMed ID: 19808935
[TBL] [Abstract][Full Text] [Related]
17. BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.
Chae H; Rhee S; Nephew KP; Kim S
Bioinformatics; 2015 Jan; 31(2):265-7. PubMed ID: 25270639
[TBL] [Abstract][Full Text] [Related]
18. CSRDB: a small RNA integrated database and browser resource for cereals.
Johnson C; Bowman L; Adai AT; Vance V; Sundaresan V
Nucleic Acids Res; 2007 Jan; 35(Database issue):D829-33. PubMed ID: 17169981
[TBL] [Abstract][Full Text] [Related]
19. miRNEST 2.0: a database of plant and animal microRNAs.
Szczesniak MW; Makalowska I
Nucleic Acids Res; 2014 Jan; 42(Database issue):D74-7. PubMed ID: 24243848
[TBL] [Abstract][Full Text] [Related]
20. sRNA-seq analysis of human embryonic stem cells and definitive endoderm reveals differentially expressed microRNAs and novel IsomiRs with distinct targets.
Hinton A; Hunter SE; Afrikanova I; Jones GA; Lopez AD; Fogel GB; Hayek A; King CC
Stem Cells; 2014 Sep; 32(9):2360-72. PubMed ID: 24805944
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
