187 related articles for article (PubMed ID: 23210478)
1. Optimization-based inference for temporally evolving networks with applications in biology.
Chang YH; Gray J; Tomlin C
J Comput Biol; 2012 Dec; 19(12):1307-23. PubMed ID: 23210478
[TBL] [Abstract][Full Text] [Related]
2. Inferring biomolecular interaction networks based on convex optimization.
Han S; Yoon Y; Cho KH
Comput Biol Chem; 2007 Oct; 31(5-6):347-54. PubMed ID: 17890159
[TBL] [Abstract][Full Text] [Related]
3. An integer optimization algorithm for robust identification of non-linear gene regulatory networks.
Chemmangattuvalappil N; Task K; Banerjee I
BMC Syst Biol; 2012 Sep; 6():119. PubMed ID: 22937832
[TBL] [Abstract][Full Text] [Related]
4. Exact reconstruction of gene regulatory networks using compressive sensing.
Chang YH; Gray JW; Tomlin CJ
BMC Bioinformatics; 2014 Dec; 15(1):400. PubMed ID: 25495633
[TBL] [Abstract][Full Text] [Related]
5. lionessR: single sample network inference in R.
Kuijjer ML; Hsieh PH; Quackenbush J; Glass K
BMC Cancer; 2019 Oct; 19(1):1003. PubMed ID: 31653243
[TBL] [Abstract][Full Text] [Related]
6. Integrating Bayesian variable selection with Modular Response Analysis to infer biochemical network topology.
Santra T; Kolch W; Kholodenko BN
BMC Syst Biol; 2013 Jul; 7():57. PubMed ID: 23829771
[TBL] [Abstract][Full Text] [Related]
7. Inferring gene regulatory networks via nonlinear state-space models and exploiting sparsity.
Noor A; Serpedin E; Nounou M; Nounou HN
IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(4):1203-11. PubMed ID: 22350207
[TBL] [Abstract][Full Text] [Related]
8. A Sparse Reconstruction Approach for Identifying Gene Regulatory Networks Using Steady-State Experiment Data.
Zhang W; Zhou T
PLoS One; 2015; 10(7):e0130979. PubMed ID: 26207991
[TBL] [Abstract][Full Text] [Related]
9. In Silico Evolution of Signaling Networks Using Rule-Based Models: Bistable Response Dynamics.
Feng S; Soyer OS
Methods Mol Biol; 2019; 1945():315-339. PubMed ID: 30945254
[TBL] [Abstract][Full Text] [Related]
10. Context Specificity in Causal Signaling Networks Revealed by Phosphoprotein Profiling.
Hill SM; Nesser NK; Johnson-Camacho K; Jeffress M; Johnson A; Boniface C; Spencer SE; Lu Y; Heiser LM; Lawrence Y; Pande NT; Korkola JE; Gray JW; Mills GB; Mukherjee S; Spellman PT
Cell Syst; 2017 Jan; 4(1):73-83.e10. PubMed ID: 28017544
[TBL] [Abstract][Full Text] [Related]
11. Reverse engineering module networks by PSO-RNN hybrid modeling.
Zhang Y; Xuan J; de los Reyes BG; Clarke R; Ressom HW
BMC Genomics; 2009 Jul; 10 Suppl 1(Suppl 1):S15. PubMed ID: 19594874
[TBL] [Abstract][Full Text] [Related]
12. Multimodal networks: structure and operations.
Heath LS; Sioson AA
IEEE/ACM Trans Comput Biol Bioinform; 2009; 6(2):321-32. PubMed ID: 19407355
[TBL] [Abstract][Full Text] [Related]
13. Biological Network Inference from Microarray Data, Current Solutions, and Assessments.
Roy S; Guzzi PH
Methods Mol Biol; 2016; 1375():155-67. PubMed ID: 26507508
[TBL] [Abstract][Full Text] [Related]
14. A network inference workflow applied to virulence-related processes in Salmonella typhimurium.
Taylor RC; Singhal M; Weller J; Khoshnevis S; Shi L; McDermott J
Ann N Y Acad Sci; 2009 Mar; 1158():143-58. PubMed ID: 19348639
[TBL] [Abstract][Full Text] [Related]
15. Multi-Objective Optimization Algorithm to Discover Condition-Specific Modules in Multiple Networks.
Ma X; Sun P; Zhao J
Molecules; 2017 Dec; 22(12):. PubMed ID: 29240706
[TBL] [Abstract][Full Text] [Related]
16. Generating realistic in silico gene networks for performance assessment of reverse engineering methods.
Marbach D; Schaffter T; Mattiussi C; Floreano D
J Comput Biol; 2009 Feb; 16(2):229-39. PubMed ID: 19183003
[TBL] [Abstract][Full Text] [Related]
17. Molecular pathway identification using biological network-regularized logistic models.
Zhang W; Wan YW; Allen GI; Pang K; Anderson ML; Liu Z
BMC Genomics; 2013; 14 Suppl 8(Suppl 8):S7. PubMed ID: 24564637
[TBL] [Abstract][Full Text] [Related]
18. Integrated inference and analysis of regulatory networks from multi-level measurements.
Poultney CS; Greenfield A; Bonneau R
Methods Cell Biol; 2012; 110():19-56. PubMed ID: 22482944
[TBL] [Abstract][Full Text] [Related]
19. Gene expression complex networks: synthesis, identification, and analysis.
Lopes FM; Cesar RM; Costa Lda F
J Comput Biol; 2011 Oct; 18(10):1353-67. PubMed ID: 21548810
[TBL] [Abstract][Full Text] [Related]
20. A computational framework for qualitative simulation of nonlinear dynamical models of gene-regulatory networks.
Ironi L; Panzeri L
BMC Bioinformatics; 2009 Oct; 10 Suppl 12(Suppl 12):S14. PubMed ID: 19828074
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]