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; Clark AG; Eisen MB; Smith DR; Bergman CM; Oliver B; Markow TA; Kaufman TC; Kellis M; Gelbart W; Iyer VN; Pollard DA; Sackton TB; Larracuente AM; Singh ND; Abad JP; Abt DN; Adryan B; Aguade M; Akashi H; Anderson WW; Aquadro CF; Ardell DH; Arguello R; Artieri CG; Barbash DA; Barker D; Barsanti P; Batterham P; Batzoglou S; Begun D; Bhutkar A; Blanco E; Bosak SA; Bradley RK; Brand AD; Brent MR; Brooks AN; Brown RH; Butlin RK; Caggese C; Calvi BR; Bernardo de Carvalho A; Caspi A; Castrezana S; Celniker SE; Chang JL; Chapple C; Chatterji S; Chinwalla A; Civetta A; Clifton SW; Comeron JM; Costello JC; Coyne JA; Daub J; David RG; Delcher AL; Delehaunty K; Do CB; Ebling H; Edwards K; Eickbush T; Evans JD; Filipski A; Findeiss S; Freyhult E; Fulton L; Fulton R; Garcia AC; Gardiner A; Garfield DA; Garvin BE; Gibson G; Gilbert D; Gnerre S; Godfrey J; Good R; Gotea V; Gravely B; Greenberg AJ; Griffiths-Jones S; Gross S; Guigo R; Gustafson EA; Haerty W; Hahn MW; Halligan DL; Halpern AL; Halter GM; Han MV; Heger A; Hillier L; Hinrichs AS; Holmes I; Hoskins RA; Hubisz MJ; Hultmark D; Huntley MA; Jaffe DB; Jagadeeshan S; Jeck WR; Johnson J; Jones CD; Jordan WC; Karpen GH; Kataoka E; Keightley PD; Kheradpour P; Kirkness EF; Koerich LB; Kristiansen K; Kudrna D; Kulathinal RJ; Kumar S; Kwok R; Lander E; Langley CH; Lapoint R; Lazzaro BP; Lee SJ; Levesque L; Li R; Lin CF; Lin MF; Lindblad-Toh K; Llopart A; Long M; Low L; Lozovsky E; Lu J; Luo M; Machado CA; Makalowski W; Marzo M; Matsuda M; Matzkin L; McAllister B; McBride CS; McKernan B; McKernan K; Mendez-Lago M; Minx P; Mollenhauer MU; Montooth K; Mount SM; Mu X; Myers E; Negre B; Newfeld S; Nielsen R; Noor MA; O'Grady P; Pachter L; Papaceit M; Parisi MJ; Parisi M; Parts L; Pedersen JS; Pesole G; Phillippy AM; Ponting CP; Pop M; Porcelli D; Powell JR; Prohaska S; Pruitt K; Puig M; Quesneville H; Ram KR; Rand D; Rasmussen MD; Reed LK; Reenan R; Reily A; Remington KA; Rieger TT; Ritchie MG; Robin C; Rogers YH; Rohde C; Rozas J; Rubenfield MJ; Ruiz A; Russo S; Salzberg SL; Sanchez-Gracia A; Saranga DJ; Sato H; Schaeffer SW; Schatz MC; Schlenke T; Schwartz R; Segarra C; Singh RS; Sirot L; Sirota M; Sisneros NB; Smith CD; Smith TF; Spieth J; Stage DE; Stark A; Stephan W; Strausberg RL; Strempel S; Sturgill D; Sutton G; Sutton GG; Tao W; Teichmann S; Tobari YN; Tomimura Y; Tsolas JM; Valente VL; Venter E; Venter JC; Vicario S; Vieira FG; Vilella AJ; Villasante A; Walenz B; Wang J; Wasserman M; Watts T; Wilson D; Wilson RK; Wing RA; Wolfner MF; Wong A; Wong GK; Wu CI; Wu G; Yamamoto D; Yang HP; Yang SP; Yorke JA; Yoshida K; Zdobnov E; Zhang P; Zhang Y; Zimin AV; Baldwin J; Abdouelleil A; Abdulkadir J; Abebe A; Abera B; Abreu J; Acer SC; Aftuck L; Alexander A; An P; Anderson E; Anderson S; Arachi H; Azer M; Bachantsang P; Barry A; Bayul T; Berlin A; Bessette D; Bloom T; Blye J; Boguslavskiy L; Bonnet C; Boukhgalter B; Bourzgui I; Brown A; Cahill P; Channer S; Cheshatsang Y; Chuda L; Citroen M; Collymore A; Cooke P; Costello M; D'Aco K; Daza R; De Haan G; DeGray S; DeMaso C; Dhargay N; Dooley K; Dooley E; Doricent M; Dorje P; Dorjee K; Dupes A; Elong R; Falk J; Farina A; Faro S; Ferguson D; Fisher S; Foley CD; Franke A; Friedrich D; Gadbois L; Gearin G; Gearin CR; Giannoukos G; Goode T; Graham J; Grandbois E; Grewal S; Gyaltsen K; Hafez N; Hagos B; Hall J; Henson C; Hollinger A; Honan T; Huard MD; Hughes L; Hurhula B; Husby ME; Kamat A; Kanga B; Kashin S; Khazanovich D; Kisner P; Lance K; Lara M; Lee W; Lennon N; Letendre F; LeVine R; Lipovsky A; Liu X; Liu J; Liu S; Lokyitsang T; Lokyitsang Y; Lubonja R; Lui A; MacDonald P; Magnisalis V; Maru K; Matthews C; McCusker W; McDonough S; Mehta T; Meldrim J; Meneus L; Mihai O; Mihalev A; Mihova T; Mittelman R; Mlenga V; Montmayeur A; Mulrain L; Navidi A; Naylor J; Negash T; Nguyen T; Nguyen N; Nicol R; Norbu C; Norbu N; Novod N; O'Neill B; Osman S; Markiewicz E; Oyono OL; Patti C; Phunkhang P; Pierre F; Priest M; Raghuraman S; Rege F; Reyes R; Rise C; Rogov P; Ross K; Ryan E; Settipalli S; Shea T; Sherpa N; Shi L; Shih D; Sparrow T; Spaulding J; Stalker J; Stange-Thomann N; Stavropoulos S; Stone C; Strader C; Tesfaye S; Thomson T; Thoulutsang Y; Thoulutsang D; Topham K; Topping I; Tsamla T; Vassiliev H; Vo A; Wangchuk T; Wangdi T; Weiand M; Wilkinson J; Wilson A; Yadav S; Young G; Yu Q; Zembek L; Zhong D; Zimmer A; Zwirko Z; Jaffe DB; Alvarez P; Brockman W; Butler J; Chin C; Gnerre S; Grabherr M; Kleber M; Mauceli E; MacCallum I
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