257 related articles for article (PubMed ID: 23217191)
1. Transcriptome walking: a laboratory-oriented GUI-based approach to mRNA identification from deep-sequenced data.
French AS
BMC Res Notes; 2012 Dec; 5():673. PubMed ID: 23217191
[TBL] [Abstract][Full Text] [Related]
2. eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing.
Yuan T; Huang X; Dittmar RL; Du M; Kohli M; Boardman L; Thibodeau SN; Wang L
BMC Genomics; 2014 Mar; 15():176. PubMed ID: 24593312
[TBL] [Abstract][Full Text] [Related]
3. Combining independent de novo assemblies optimizes the coding transcriptome for nonconventional model eukaryotic organisms.
Cerveau N; Jackson DJ
BMC Bioinformatics; 2016 Dec; 17(1):525. PubMed ID: 27938328
[TBL] [Abstract][Full Text] [Related]
4. GigaTON: an extensive publicly searchable database providing a new reference transcriptome in the pacific oyster Crassostrea gigas.
Riviere G; Klopp C; Ibouniyamine N; Huvet A; Boudry P; Favrel P
BMC Bioinformatics; 2015 Dec; 16():401. PubMed ID: 26627443
[TBL] [Abstract][Full Text] [Related]
5. Bioinformatic Pipelines to Analyze lncRNAs RNAseq Data.
Agnelli L; Bortoluzzi S; Pruneri G
Methods Mol Biol; 2021; 2348():55-69. PubMed ID: 34160799
[TBL] [Abstract][Full Text] [Related]
6. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
Seok J; Xu W; Jiang H; Davis RW; Xiao W
PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
[TBL] [Abstract][Full Text] [Related]
7. GENAVi: a shiny web application for gene expression normalization, analysis and visualization.
Reyes ALP; Silva TC; Coetzee SG; Plummer JT; Davis BD; Chen S; Hazelett DJ; Lawrenson K; Berman BP; Gayther SA; Jones MR
BMC Genomics; 2019 Oct; 20(1):745. PubMed ID: 31619158
[TBL] [Abstract][Full Text] [Related]
8. Djinn Lite: a tool for customised gene transcript modelling, annotation-data enrichment and exploration.
Teber ET; Crawford E; Bolton KB; Van Dyk D; Schofield PR; Kapoor V; Church WB
BMC Bioinformatics; 2006 Jan; 7():33. PubMed ID: 16426464
[TBL] [Abstract][Full Text] [Related]
9. Current and Future Methods for mRNA Analysis: A Drive Toward Single Molecule Sequencing.
Bayega A; Fahiminiya S; Oikonomopoulos S; Ragoussis J
Methods Mol Biol; 2018; 1783():209-241. PubMed ID: 29767365
[TBL] [Abstract][Full Text] [Related]
10. A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.
Sze SH; Tarone AM
BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S6. PubMed ID: 25082000
[TBL] [Abstract][Full Text] [Related]
11. NGS-Trex: Next Generation Sequencing Transcriptome profile explorer.
Boria I; Boatti L; Pesole G; Mignone F
BMC Bioinformatics; 2013; 14 Suppl 7(Suppl 7):S10. PubMed ID: 23815181
[TBL] [Abstract][Full Text] [Related]
12. ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species.
Zeng V; Extavour CG
Database (Oxford); 2012; 2012():bas048. PubMed ID: 23180770
[TBL] [Abstract][Full Text] [Related]
13. GeneViTo: visualizing gene-product functional and structural features in genomic datasets.
Vernikos GS; Gkogkas CG; Promponas VJ; Hamodrakas SJ
BMC Bioinformatics; 2003 Oct; 4():53. PubMed ID: 14594459
[TBL] [Abstract][Full Text] [Related]
14. Bioinformatic Methods for the Analysis of High-Throughput RNA Sequencing in Arbuscular Mycorrhizal Fungi.
Venice F; Salvioli di Fossalunga A; Bonfante P
Methods Mol Biol; 2020; 2146():137-153. PubMed ID: 32415601
[TBL] [Abstract][Full Text] [Related]
15. De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads.
Kerr SC; Gaiti F; Tanurdzic M
Methods Mol Biol; 2019; 1933():265-275. PubMed ID: 30945191
[TBL] [Abstract][Full Text] [Related]
16. Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq.
Lu B; Zeng Z; Shi T
Sci China Life Sci; 2013 Feb; 56(2):143-55. PubMed ID: 23393030
[TBL] [Abstract][Full Text] [Related]
17. A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, Brugia malayi.
Choi YJ; Ghedin E; Berriman M; McQuillan J; Holroyd N; Mayhew GF; Christensen BM; Michalski ML
PLoS Negl Trop Dis; 2011 Dec; 5(12):e1409. PubMed ID: 22180794
[TBL] [Abstract][Full Text] [Related]
18. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
Johnson BK; Scholz MB; Teal TK; Abramovitch RB
BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
[TBL] [Abstract][Full Text] [Related]
19. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome.
Ptitsyn A; Temanni R; Bouchard C; Anderson PA
PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794
[TBL] [Abstract][Full Text] [Related]
20.
; ; . PubMed ID:
[No Abstract] [Full Text] [Related]
[Next] [New Search]