BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

296 related articles for article (PubMed ID: 23228330)

  • 1. Impact of mutations on the allosteric conformational equilibrium.
    Weinkam P; Chen YC; Pons J; Sali A
    J Mol Biol; 2013 Feb; 425(3):647-61. PubMed ID: 23228330
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Coupling dynamics and evolutionary information with structure to identify protein regulatory and functional binding sites.
    Mishra SK; Kandoi G; Jernigan RL
    Proteins; 2019 Oct; 87(10):850-868. PubMed ID: 31141211
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular Dynamics-Markov State Model of Protein Ligand Binding and Allostery in CRIB-PDZ: Conformational Selection and Induced Fit.
    Thayer KM; Lakhani B; Beveridge DL
    J Phys Chem B; 2017 Jun; 121(22):5509-5514. PubMed ID: 28489401
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Structure-based model of allostery predicts coupling between distant sites.
    Weinkam P; Pons J; Sali A
    Proc Natl Acad Sci U S A; 2012 Mar; 109(13):4875-80. PubMed ID: 22403063
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein Allostery and Conformational Dynamics.
    Guo J; Zhou HX
    Chem Rev; 2016 Jun; 116(11):6503-15. PubMed ID: 26876046
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Computation of conformational coupling in allosteric proteins.
    Kidd BA; Baker D; Thomas WE
    PLoS Comput Biol; 2009 Aug; 5(8):e1000484. PubMed ID: 19714199
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Exploring and Learning the Universe of Protein Allostery Using Artificial Intelligence Augmented Biophysical and Computational Approaches.
    Agajanian S; Alshahrani M; Bai F; Tao P; Verkhivker GM
    J Chem Inf Model; 2023 Mar; 63(5):1413-1428. PubMed ID: 36827465
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Coherent conformational degrees of freedom as a structural basis for allosteric communication.
    Mitternacht S; Berezovsky IN
    PLoS Comput Biol; 2011 Dec; 7(12):e1002301. PubMed ID: 22174669
    [TBL] [Abstract][Full Text] [Related]  

  • 9. What Mutagenesis Can and Cannot Reveal About Allostery.
    Carlson GM; Fenton AW
    Biophys J; 2016 May; 110(9):1912-23. PubMed ID: 27166800
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Markov models for the elucidation of allosteric regulation.
    Sengupta U; Strodel B
    Philos Trans R Soc Lond B Biol Sci; 2018 Jun; 373(1749):. PubMed ID: 29735732
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Allosteric coupling and conformational fluctuations in proteins.
    Onaran HO; Costa T
    Curr Protein Pept Sci; 2009 Apr; 10(2):110-5. PubMed ID: 19355978
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular Dynamics Simulation Techniques as Tools in Drug Discovery and Pharmacology: A Focus on Allosteric Drugs.
    Platania CBM; Bucolo C
    Methods Mol Biol; 2021; 2253():245-254. PubMed ID: 33315227
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Rigid Residue Scan Simulations Systematically Reveal Residue Entropic Roles in Protein Allostery.
    Kalescky R; Zhou H; Liu J; Tao P
    PLoS Comput Biol; 2016 Apr; 12(4):e1004893. PubMed ID: 27115535
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Structure-based predictive models for allosteric hot spots.
    Demerdash ON; Daily MD; Mitchell JC
    PLoS Comput Biol; 2009 Oct; 5(10):e1000531. PubMed ID: 19816556
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Is allostery an intrinsic property of all dynamic proteins?
    Gunasekaran K; Ma B; Nussinov R
    Proteins; 2004 Nov; 57(3):433-43. PubMed ID: 15382234
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The Role of Protein-Ligand Contacts in Allosteric Regulation of the Escherichia coli Catabolite Activator Protein.
    Townsend PD; Rodgers TL; Glover LC; Korhonen HJ; Richards SA; Colwell LJ; Pohl E; Wilson MR; Hodgson DR; McLeish TC; Cann MJ
    J Biol Chem; 2015 Sep; 290(36):22225-35. PubMed ID: 26187469
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A self-consistent structural perturbation approach for determining the magnitude and extent of allosteric coupling in proteins.
    Rajasekaran N; Naganathan AN
    Biochem J; 2017 Jul; 474(14):2379-2388. PubMed ID: 28522638
    [TBL] [Abstract][Full Text] [Related]  

  • 18. AlloSigMA 2: paving the way to designing allosteric effectors and to exploring allosteric effects of mutations.
    Tan ZW; Guarnera E; Tee WV; Berezovsky IN
    Nucleic Acids Res; 2020 Jul; 48(W1):W116-W124. PubMed ID: 32392302
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular Dynamics Simulations and Dynamic Network Analysis Reveal the Allosteric Unbinding of Monobody to H-Ras Triggered by R135K Mutation.
    Ni D; Song K; Zhang J; Lu S
    Int J Mol Sci; 2017 Oct; 18(11):. PubMed ID: 29072601
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Probing Protein Allostery as a Residue-Specific Concept via Residue Response Maps.
    Hayatshahi HS; Ahuactzin E; Tao P; Wang S; Liu J
    J Chem Inf Model; 2019 Nov; 59(11):4691-4705. PubMed ID: 31589429
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.