113 related articles for article (PubMed ID: 23266983)
1. Peak identification for ChIP-seq data with no controls.
Zhang YF; Su B
Dongwuxue Yanjiu; 2012 Dec; 33(E5-6):E121-8. PubMed ID: 23266983
[TBL] [Abstract][Full Text] [Related]
2. Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing.
Hoffman BG; Jones SJ
J Endocrinol; 2009 Apr; 201(1):1-13. PubMed ID: 19136617
[TBL] [Abstract][Full Text] [Related]
3. Sierra platinum: a fast and robust peak-caller for replicated ChIP-seq experiments with visual quality-control and -steering.
Müller L; Gerighausen D; Farman M; Zeckzer D
BMC Bioinformatics; 2016 Sep; 17(1):377. PubMed ID: 27634469
[TBL] [Abstract][Full Text] [Related]
4. Use model-based Analysis of ChIP-Seq (MACS) to analyze short reads generated by sequencing protein-DNA interactions in embryonic stem cells.
Liu T
Methods Mol Biol; 2014; 1150():81-95. PubMed ID: 24743991
[TBL] [Abstract][Full Text] [Related]
5. A fully Bayesian hidden Ising model for ChIP-seq data analysis.
Mo Q
Biostatistics; 2012 Jan; 13(1):113-28. PubMed ID: 21914728
[TBL] [Abstract][Full Text] [Related]
6. Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks.
Nix DA; Courdy SJ; Boucher KM
BMC Bioinformatics; 2008 Dec; 9():523. PubMed ID: 19061503
[TBL] [Abstract][Full Text] [Related]
7. Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
Hussey SG; Mizrachi E; Groover A; Berger DK; Myburg AA
BMC Plant Biol; 2015 May; 15():117. PubMed ID: 25957781
[TBL] [Abstract][Full Text] [Related]
8. An integrated software system for analyzing ChIP-chip and ChIP-seq data.
Ji H; Jiang H; Ma W; Johnson DS; Myers RM; Wong WH
Nat Biotechnol; 2008 Nov; 26(11):1293-300. PubMed ID: 18978777
[TBL] [Abstract][Full Text] [Related]
9. Joint modeling of ChIP-seq data via a Markov random field model.
Bao Y; Vinciotti V; Wit E; 't Hoen PA
Biostatistics; 2014 Apr; 15(2):296-310. PubMed ID: 24178187
[TBL] [Abstract][Full Text] [Related]
10. ChIP-chip versus ChIP-seq: lessons for experimental design and data analysis.
Ho JW; Bishop E; Karchenko PV; Nègre N; White KP; Park PJ
BMC Genomics; 2011 Feb; 12():134. PubMed ID: 21356108
[TBL] [Abstract][Full Text] [Related]
11. ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data.
Zhu LJ; Gazin C; Lawson ND; Pagès H; Lin SM; Lapointe DS; Green MR
BMC Bioinformatics; 2010 May; 11():237. PubMed ID: 20459804
[TBL] [Abstract][Full Text] [Related]
12. ChIP-seq Data Processing for PcG Proteins and Associated Histone Modifications.
Bogdanovic O; van Heeringen SJ
Methods Mol Biol; 2016; 1480():37-53. PubMed ID: 27659973
[TBL] [Abstract][Full Text] [Related]
13. Large-scale quality analysis of published ChIP-seq data.
Marinov GK; Kundaje A; Park PJ; Wold BJ
G3 (Bethesda); 2014 Feb; 4(2):209-23. PubMed ID: 24347632
[TBL] [Abstract][Full Text] [Related]
14. Analyzing ChIP-seq data: preprocessing, normalization, differential identification, and binding pattern characterization.
Taslim C; Huang K; Huang T; Lin S
Methods Mol Biol; 2012; 802():275-91. PubMed ID: 22130887
[TBL] [Abstract][Full Text] [Related]
15. PICS: probabilistic inference for ChIP-seq.
Zhang X; Robertson G; Krzywinski M; Ning K; Droit A; Jones S; Gottardo R
Biometrics; 2011 Mar; 67(1):151-63. PubMed ID: 20528864
[TBL] [Abstract][Full Text] [Related]
16. Quantitatively profiling genome-wide patterns of histone modifications in Arabidopsis thaliana using ChIP-seq.
Luo C; Lam E
Methods Mol Biol; 2014; 1112():177-93. PubMed ID: 24478015
[TBL] [Abstract][Full Text] [Related]
17. Genome-wide epigenetic analysis of human pluripotent stem cells by ChIP and ChIP-Seq.
Hitchler MJ; Rice JC
Methods Mol Biol; 2011; 767():253-67. PubMed ID: 21822881
[TBL] [Abstract][Full Text] [Related]
18. Next-generation sequencing applied to flower development: ChIP-Seq.
Graciet E; O'Maoiléidigh DS; Wellmer F
Methods Mol Biol; 2014; 1110():413-29. PubMed ID: 24395273
[TBL] [Abstract][Full Text] [Related]
19. Probabilistic peak calling and controlling false discovery rate estimations in transcription factor binding site mapping from ChIP-seq.
Jiao S; Bailey CP; Zhang S; Ladunga I
Methods Mol Biol; 2010; 674():161-77. PubMed ID: 20827591
[TBL] [Abstract][Full Text] [Related]
20. ChIP-Seq: a method for global identification of regulatory elements in the genome.
Raha D; Hong M; Snyder M
Curr Protoc Mol Biol; 2010 Jul; Chapter 21():Unit 21.19.1-14. PubMed ID: 20583098
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
