These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

221 related articles for article (PubMed ID: 23268441)

  • 1. GBSA: a comprehensive software for analysing whole genome bisulfite sequencing data.
    Benoukraf T; Wongphayak S; Hadi LH; Wu M; Soong R
    Nucleic Acids Res; 2013 Feb; 41(4):e55. PubMed ID: 23268441
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

  • 3. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K; Ting AH; Li J
    BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
    [TBL] [Abstract][Full Text] [Related]  

  • 4. An integrated package for bisulfite DNA methylation data analysis with Indel-sensitive mapping.
    Zhou Q; Lim JQ; Sung WK; Li G
    BMC Bioinformatics; 2019 Jan; 20(1):47. PubMed ID: 30669962
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Methy-Pipe: an integrated bioinformatics pipeline for whole genome bisulfite sequencing data analysis.
    Jiang P; Sun K; Lun FM; Guo AM; Wang H; Chan KC; Chiu RW; Lo YM; Sun H
    PLoS One; 2014; 9(6):e100360. PubMed ID: 24945300
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Fast, accurate, and lightweight analysis of BS-treated reads with ERNE 2.
    Prezza N; Vezzi F; Käller M; Policriti A
    BMC Bioinformatics; 2016 Mar; 17 Suppl 4(Suppl 4):69. PubMed ID: 26961371
    [TBL] [Abstract][Full Text] [Related]  

  • 7. BS Seeker: precise mapping for bisulfite sequencing.
    Chen PY; Cokus SJ; Pellegrini M
    BMC Bioinformatics; 2010 Apr; 11():203. PubMed ID: 20416082
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data.
    Guo W; Fiziev P; Yan W; Cokus S; Sun X; Zhang MQ; Chen PY; Pellegrini M
    BMC Genomics; 2013 Nov; 14():774. PubMed ID: 24206606
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BRAT-BW: efficient and accurate mapping of bisulfite-treated reads.
    Harris EY; Ponts N; Le Roch KG; Lonardi S
    Bioinformatics; 2012 Jul; 28(13):1795-6. PubMed ID: 22563065
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BS-Seeker3: ultrafast pipeline for bisulfite sequencing.
    Huang KYY; Huang YJ; Chen PY
    BMC Bioinformatics; 2018 Apr; 19(1):111. PubMed ID: 29614954
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CpG_MPs: identification of CpG methylation patterns of genomic regions from high-throughput bisulfite sequencing data.
    Su J; Yan H; Wei Y; Liu H; Liu H; Wang F; Lv J; Wu Q; Zhang Y
    Nucleic Acids Res; 2013 Jan; 41(1):e4. PubMed ID: 22941633
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Approaches for the Analysis and Interpretation of Whole Genome Bisulfite Sequencing Data.
    Stuart T; Buckberry S; Lister R
    Methods Mol Biol; 2018; 1767():299-310. PubMed ID: 29524143
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Comparison and quantitative verification of mapping algorithms for whole-genome bisulfite sequencing.
    Kunde-Ramamoorthy G; Coarfa C; Laritsky E; Kessler NJ; Harris RA; Xu M; Chen R; Shen L; Milosavljevic A; Waterland RA
    Nucleic Acids Res; 2014 Apr; 42(6):e43. PubMed ID: 24391148
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data.
    Hong C; Clement NL; Clement S; Hammoud SS; Carrell DT; Cairns BR; Snell Q; Clement MJ; Johnson WE
    BMC Bioinformatics; 2013 Nov; 14():337. PubMed ID: 24261665
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A comprehensive evaluation of alignment software for reduced representation bisulfite sequencing data.
    Sun X; Han Y; Zhou L; Chen E; Lu B; Liu Y; Pan X; Cowley AW; Liang M; Wu Q; Lu Y; Liu P
    Bioinformatics; 2018 Aug; 34(16):2715-2723. PubMed ID: 29579198
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Whole-Genome Bisulfite Sequencing for the Analysis of Genome-Wide DNA Methylation and Hydroxymethylation Patterns at Single-Nucleotide Resolution.
    Kernaleguen M; Daviaud C; Shen Y; Bonnet E; Renault V; Deleuze JF; Mauger F; Tost J
    Methods Mol Biol; 2018; 1767():311-349. PubMed ID: 29524144
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions.
    Hansen KD; Langmead B; Irizarry RA
    Genome Biol; 2012 Oct; 13(10):R83. PubMed ID: 23034175
    [TBL] [Abstract][Full Text] [Related]  

  • 19. wg-blimp: an end-to-end analysis pipeline for whole genome bisulfite sequencing data.
    Wöste M; Leitão E; Laurentino S; Horsthemke B; Rahmann S; Schröder C
    BMC Bioinformatics; 2020 May; 21(1):169. PubMed ID: 32357829
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BSMAP: whole genome bisulfite sequence MAPping program.
    Xi Y; Li W
    BMC Bioinformatics; 2009 Jul; 10():232. PubMed ID: 19635165
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.