These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
173 related articles for article (PubMed ID: 23272132)
1. Contributions of speed and accuracy to translational selection in bacteria. Ran W; Higgs PG PLoS One; 2012; 7(12):e51652. PubMed ID: 23272132 [TBL] [Abstract][Full Text] [Related]
2. Translational Selection for Speed Is Not Sufficient to Explain Variation in Bacterial Codon Usage Bias. Mahajan S; Agashe D Genome Biol Evol; 2018 Feb; 10(2):562-576. PubMed ID: 29385509 [TBL] [Abstract][Full Text] [Related]
3. Codon Usage Optimization in the Prokaryotic Tree of Life: How Synonymous Codons Are Differentially Selected in Sequence Domains with Different Expression Levels and Degrees of Conservation. López JL; Lozano MJ; Fabre ML; Lagares A mBio; 2020 Jul; 11(4):. PubMed ID: 32694138 [TBL] [Abstract][Full Text] [Related]
4. Variation in the strength of selected codon usage bias among bacteria. Sharp PM; Bailes E; Grocock RJ; Peden JF; Sockett RE Nucleic Acids Res; 2005; 33(4):1141-53. PubMed ID: 15728743 [TBL] [Abstract][Full Text] [Related]
5. Differences in codon bias cannot explain differences in translational power among microbes. Dethlefsen L; Schmidt TM BMC Bioinformatics; 2005 Jan; 6():3. PubMed ID: 15636642 [TBL] [Abstract][Full Text] [Related]
6. Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization. Rocha EP Genome Res; 2004 Nov; 14(11):2279-86. PubMed ID: 15479947 [TBL] [Abstract][Full Text] [Related]
7. Transfer RNA gene numbers may not be completely responsible for the codon usage bias in asparagine, isoleucine, phenylalanine, and tyrosine in the high expression genes in bacteria. Satapathy SS; Dutta M; Buragohain AK; Ray SK J Mol Evol; 2012 Aug; 75(1-2):34-42. PubMed ID: 23053196 [TBL] [Abstract][Full Text] [Related]
8. Coevolution of codon usage and tRNA genes leads to alternative stable states of biased codon usage. Higgs PG; Ran W Mol Biol Evol; 2008 Nov; 25(11):2279-91. PubMed ID: 18687657 [TBL] [Abstract][Full Text] [Related]
9. The influence of anticodon-codon interactions and modified bases on codon usage bias in bacteria. Ran W; Higgs PG Mol Biol Evol; 2010 Sep; 27(9):2129-40. PubMed ID: 20403966 [TBL] [Abstract][Full Text] [Related]
10. Synonymous codon usage in Escherichia coli: selection for translational accuracy. Stoletzki N; Eyre-Walker A Mol Biol Evol; 2007 Feb; 24(2):374-81. PubMed ID: 17101719 [TBL] [Abstract][Full Text] [Related]
11. Optimal codon identities in bacteria: implications from the conflicting results of two different methods. Wang B; Shao ZQ; Xu Y; Liu J; Liu Y; Hang YY; Chen JQ PLoS One; 2011; 6(7):e22714. PubMed ID: 21829489 [TBL] [Abstract][Full Text] [Related]
12. Codon usages in different gene classes of the Escherichia coli genome. Karlin S; Mrázek J; Campbell AM Mol Microbiol; 1998 Sep; 29(6):1341-55. PubMed ID: 9781873 [TBL] [Abstract][Full Text] [Related]
13. Translational selection is operative for synonymous codon usage in Clostridium perfringens and Clostridium acetobutylicum. Musto H; Romero H; Zavala A Microbiology (Reading); 2003 Apr; 149(Pt 4):855-863. PubMed ID: 12686628 [TBL] [Abstract][Full Text] [Related]
14. Forces that influence the evolution of codon bias. Sharp PM; Emery LR; Zeng K Philos Trans R Soc Lond B Biol Sci; 2010 Apr; 365(1544):1203-12. PubMed ID: 20308095 [TBL] [Abstract][Full Text] [Related]
15. Quantification of codon selection for comparative bacterial genomics. Retchless AC; Lawrence JG BMC Genomics; 2011 Jul; 12():374. PubMed ID: 21787402 [TBL] [Abstract][Full Text] [Related]
16. Codon Usage Heterogeneity in the Multipartite Prokaryote Genome: Selection-Based Coding Bias Associated with Gene Location, Expression Level, and Ancestry. López JL; Lozano MJ; Lagares A; Fabre ML; Draghi WO; Del Papa MF; Pistorio M; Becker A; Wibberg D; Schlüter A; Pühler A; Blom J; Goesmann A; Lagares A mBio; 2019 May; 10(3):. PubMed ID: 31138741 [TBL] [Abstract][Full Text] [Related]
17. An improved estimation of tRNA expression to better elucidate the coevolution between tRNA abundance and codon usage in bacteria. Wei Y; Silke JR; Xia X Sci Rep; 2019 Feb; 9(1):3184. PubMed ID: 30816249 [TBL] [Abstract][Full Text] [Related]
18. Selection-driven cost-efficiency optimization of transcripts modulates gene evolutionary rate in bacteria. Seward EA; Kelly S Genome Biol; 2018 Jul; 19(1):102. PubMed ID: 30064467 [TBL] [Abstract][Full Text] [Related]
19. Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy? Eyre-Walker A Mol Biol Evol; 1996 Jul; 13(6):864-72. PubMed ID: 8754221 [TBL] [Abstract][Full Text] [Related]
20. Quantifying codon usage in signal peptides: Gene expression and amino acid usage explain apparent selection for inefficient codons. Cope AL; Hettich RL; Gilchrist MA Biochim Biophys Acta Biomembr; 2018 Dec; 1860(12):2479-2485. PubMed ID: 30279149 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]