These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 23273318)

  • 1. Reannotation of translational start sites in the genome of Mycobacterium tuberculosis.
    DeJesus MA; Sacchettini JC; Ioerger TR
    Tuberculosis (Edinb); 2013 Jan; 93(1):18-25. PubMed ID: 23273318
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Experimental determination of translational start sites resolves uncertainties in genomic open reading frame predictions - application to Mycobacterium tuberculosis.
    Smollett KL; Fivian-Hughes AS; Smith JE; Chang A; Rao T; Davis EO
    Microbiology (Reading); 2009 Jan; 155(Pt 1):186-197. PubMed ID: 19118359
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Proteogenomic analysis of polymorphisms and gene annotation divergences in prokaryotes using a clustered mass spectrometry-friendly database.
    de Souza GA; Arntzen MØ; Fortuin S; Schürch AC; Målen H; McEvoy CR; van Soolingen D; Thiede B; Warren RM; Wiker HG
    Mol Cell Proteomics; 2011 Jan; 10(1):M110.002527. PubMed ID: 21030493
    [TBL] [Abstract][Full Text] [Related]  

  • 4. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions.
    Besemer J; Lomsadze A; Borodovsky M
    Nucleic Acids Res; 2001 Jun; 29(12):2607-18. PubMed ID: 11410670
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Identification of Translation Start Sites in Bacterial Genomes.
    Meydan S; Klepacki D; Mankin AS; Vázquez-Laslop N
    Methods Mol Biol; 2021; 2252():27-55. PubMed ID: 33765270
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry.
    Kelkar DS; Kumar D; Kumar P; Balakrishnan L; Muthusamy B; Yadav AK; Shrivastava P; Marimuthu A; Anand S; Sundaram H; Kingsbury R; Harsha HC; Nair B; Prasad TS; Chauhan DS; Katoch K; Katoch VM; Kumar P; Chaerkady R; Ramachandran S; Dash D; Pandey A
    Mol Cell Proteomics; 2011 Dec; 10(12):M111.011627. PubMed ID: 21969609
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Finding prokaryotic genes by the 'frame-by-frame' algorithm: targeting gene starts and overlapping genes.
    Shmatkov AM; Melikyan AA; Chernousko FL; Borodovsky M
    Bioinformatics; 1999 Nov; 15(11):874-86. PubMed ID: 10743554
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Reduce manual curation by combining gene predictions from multiple annotation engines, a case study of start codon prediction.
    Ederveen TH; Overmars L; van Hijum SA
    PLoS One; 2013; 8(5):e63523. PubMed ID: 23675487
    [TBL] [Abstract][Full Text] [Related]  

  • 10. REPARATION: ribosome profiling assisted (re-)annotation of bacterial genomes.
    Ndah E; Jonckheere V; Giess A; Valen E; Menschaert G; Van Damme P
    Nucleic Acids Res; 2017 Nov; 45(20):e168. PubMed ID: 28977509
    [TBL] [Abstract][Full Text] [Related]  

  • 11. uORF-seqr: A Machine Learning-Based Approach to the Identification of Upstream Open Reading Frames in Yeast.
    Spealman P; Naik A; McManus J
    Methods Mol Biol; 2021; 2252():313-329. PubMed ID: 33765283
    [TBL] [Abstract][Full Text] [Related]  

  • 12. DeepRibo: a neural network for precise gene annotation of prokaryotes by combining ribosome profiling signal and binding site patterns.
    Clauwaert J; Menschaert G; Waegeman W
    Nucleic Acids Res; 2019 Apr; 47(6):e36. PubMed ID: 30753697
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Achieving Accurate Sequence and Annotation Data for Caulobacter vibrioides CB13.
    Berrios L; Ely B
    Curr Microbiol; 2018 Dec; 75(12):1642-1648. PubMed ID: 30259084
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Accuracy improvement for identifying translation initiation sites in microbial genomes.
    Zhu HQ; Hu GQ; Ouyang ZQ; Wang J; She ZS
    Bioinformatics; 2004 Dec; 20(18):3308-17. PubMed ID: 15247104
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Non-AUG start codons: Expanding and regulating the small and alternative ORFeome.
    Cao X; Slavoff SA
    Exp Cell Res; 2020 Jun; 391(1):111973. PubMed ID: 32209305
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EasyGene--a prokaryotic gene finder that ranks ORFs by statistical significance.
    Larsen TS; Krogh A
    BMC Bioinformatics; 2003 Jun; 4():21. PubMed ID: 12783628
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comprehensive identification of translation start sites by tetracycline-inhibited ribosome profiling.
    Nakahigashi K; Takai Y; Kimura M; Abe N; Nakayashiki T; Shiwa Y; Yoshikawa H; Wanner BL; Ishihama Y; Mori H
    DNA Res; 2016 Jun; 23(3):193-201. PubMed ID: 27013550
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Identification of the translational start site of codon-optimized mCherry in Mycobacterium tuberculosis.
    Carroll P; Muwanguzi-Karugaba J; Melief E; Files M; Parish T
    BMC Res Notes; 2014 Jun; 7():366. PubMed ID: 24934902
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Computational discovery and annotation of conserved small open reading frames in fungal genomes.
    Mat-Sharani S; Firdaus-Raih M
    BMC Bioinformatics; 2019 Feb; 19(Suppl 13):551. PubMed ID: 30717662
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ac-LysargiNase efficiently helps genome reannotation of Mycolicibacterium smegmatis MC
    Zhu H; Jiang S; Zhou W; Chi H; Sun J; Shi J; Zhang Z; Chang L; Yu L; Zhang L; Lyu Z; Xu P; Zhang Y
    J Proteomics; 2022 Jul; 264():104622. PubMed ID: 35598869
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.