217 related articles for article (PubMed ID: 23282094)
1. A de novo next generation genomic sequence assembler based on string graph and MapReduce cloud computing framework.
Chang YJ; Chen CC; Chen CL; Ho JM
BMC Genomics; 2012; 13 Suppl 7(Suppl 7):S28. PubMed ID: 23282094
[TBL] [Abstract][Full Text] [Related]
2. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
[TBL] [Abstract][Full Text] [Related]
3. Benchmarking of de novo assembly algorithms for Nanopore data reveals optimal performance of OLC approaches.
Cherukuri Y; Janga SC
BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):507. PubMed ID: 27556636
[TBL] [Abstract][Full Text] [Related]
4. Evaluating long-read de novo assembly tools for eukaryotic genomes: insights and considerations.
Cosma BM; Shirali Hossein Zade R; Jordan EN; van Lent P; Peng C; Pillay S; Abeel T
Gigascience; 2022 Dec; 12():. PubMed ID: 38000912
[TBL] [Abstract][Full Text] [Related]
5. Clover: a clustering-oriented de novo assembler for Illumina sequences.
Hsieh MF; Lu CL; Tang CY
BMC Bioinformatics; 2020 Nov; 21(1):528. PubMed ID: 33203354
[TBL] [Abstract][Full Text] [Related]
6. BASE: a practical de novo assembler for large genomes using long NGS reads.
Liu B; Liu CM; Li D; Li Y; Ting HF; Yiu SM; Luo R; Lam TW
BMC Genomics; 2016 Aug; 17 Suppl 5(Suppl 5):499. PubMed ID: 27586129
[TBL] [Abstract][Full Text] [Related]
7. FastEtch: A Fast Sketch-Based Assembler for Genomes.
Ghosh P; Kalyanaraman A
IEEE/ACM Trans Comput Biol Bioinform; 2019; 16(4):1091-1106. PubMed ID: 28910776
[TBL] [Abstract][Full Text] [Related]
8. Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
Wick RR; Judd LM; Gorrie CL; Holt KE
PLoS Comput Biol; 2017 Jun; 13(6):e1005595. PubMed ID: 28594827
[TBL] [Abstract][Full Text] [Related]
9. CloudDOE: a user-friendly tool for deploying Hadoop clouds and analyzing high-throughput sequencing data with MapReduce.
Chung WC; Chen CC; Ho JM; Lin CY; Hsu WL; Wang YC; Lee DT; Lai F; Huang CW; Chang YJ
PLoS One; 2014; 9(6):e98146. PubMed ID: 24897343
[TBL] [Abstract][Full Text] [Related]
10. Coverage-preserving sparsification of overlap graphs for long-read assembly.
Jain C
Bioinformatics; 2023 Mar; 39(3):. PubMed ID: 36892439
[TBL] [Abstract][Full Text] [Related]
11. Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations.
García-López R; Vázquez-Castellanos JF; Moya A
Front Bioeng Biotechnol; 2015; 3():141. PubMed ID: 26442255
[TBL] [Abstract][Full Text] [Related]
12. LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads.
El-Metwally S; Zakaria M; Hamza T
Bioinformatics; 2016 Nov; 32(21):3215-3223. PubMed ID: 27412092
[TBL] [Abstract][Full Text] [Related]
13. GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.
Jünemann S; Prior K; Albersmeier A; Albaum S; Kalinowski J; Goesmann A; Stoye J; Harmsen D
PLoS One; 2014; 9(9):e107014. PubMed ID: 25198770
[TBL] [Abstract][Full Text] [Related]
14. Integration of string and de Bruijn graphs for genome assembly.
Huang YT; Liao CF
Bioinformatics; 2016 May; 32(9):1301-7. PubMed ID: 26755626
[TBL] [Abstract][Full Text] [Related]
15. Using Apache Spark on genome assembly for scalable overlap-graph reduction.
Paul AJ; Lawrence D; Song M; Lim SH; Pan C; Ahn TH
Hum Genomics; 2019 Oct; 13(Suppl 1):48. PubMed ID: 31639049
[TBL] [Abstract][Full Text] [Related]
16. Readjoiner: a fast and memory efficient string graph-based sequence assembler.
Gonnella G; Kurtz S
BMC Bioinformatics; 2012 May; 13():82. PubMed ID: 22559072
[TBL] [Abstract][Full Text] [Related]
17. PERGA: a paired-end read guided de novo assembler for extending contigs using SVM and look ahead approach.
Zhu X; Leung HC; Chin FY; Yiu SM; Quan G; Liu B; Wang Y
PLoS One; 2014; 9(12):e114253. PubMed ID: 25461763
[TBL] [Abstract][Full Text] [Related]
18. TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix.
Yoon S; Kim D; Kang K; Park WJ
BMC Genomics; 2018 Sep; 19(1):653. PubMed ID: 30180798
[TBL] [Abstract][Full Text] [Related]
19. LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
Mendes CI; Vila-Cerqueira P; Motro Y; Moran-Gilad J; Carriço JA; Ramirez M
Gigascience; 2022 Dec; 12():. PubMed ID: 36576131
[TBL] [Abstract][Full Text] [Related]
20. Software for pre-processing Illumina next-generation sequencing short read sequences.
Chen C; Khaleel SS; Huang H; Wu CH
Source Code Biol Med; 2014; 9():8. PubMed ID: 24955109
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]