BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

277 related articles for article (PubMed ID: 23292976)

  • 1. Pyteomics--a Python framework for exploratory data analysis and rapid software prototyping in proteomics.
    Goloborodko AA; Levitsky LI; Ivanov MV; Gorshkov MV
    J Am Soc Mass Spectrom; 2013 Feb; 24(2):301-4. PubMed ID: 23292976
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pyOpenMS: a Python-based interface to the OpenMS mass-spectrometry algorithm library.
    Röst HL; Schmitt U; Aebersold R; Malmström L
    Proteomics; 2014 Jan; 14(1):74-7. PubMed ID: 24420968
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Installation and use of LabKey Server for proteomics.
    Eckels J; Hussey P; Nelson EK; Myers T; Rauch A; Bellew M; Connolly B; Law W; Eng JK; Katz J; McIntosh M; Mallick P; Igra M
    Curr Protoc Bioinformatics; 2011 Dec; Chapter 13():13.5.1-13.5.25. PubMed ID: 22161569
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DIANA--algorithmic improvements for analysis of data-independent acquisition MS data.
    Teleman J; Röst HL; Rosenberger G; Schmitt U; Malmström L; Malmström J; Levander F
    Bioinformatics; 2015 Feb; 31(4):555-62. PubMed ID: 25348213
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Pyteomics 4.0: Five Years of Development of a Python Proteomics Framework.
    Levitsky LI; Klein JA; Ivanov MV; Gorshkov MV
    J Proteome Res; 2019 Feb; 18(2):709-714. PubMed ID: 30576148
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature.
    Hart RK; Rico R; Hare E; Garcia J; Westbrook J; Fusaro VA
    Bioinformatics; 2015 Jan; 31(2):268-70. PubMed ID: 25273102
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IPeak: An open source tool to combine results from multiple MS/MS search engines.
    Wen B; Du C; Li G; Ghali F; Jones AR; Käll L; Xu S; Zhou R; Ren Z; Feng Q; Xu X; Wang J
    Proteomics; 2015 Sep; 15(17):2916-20. PubMed ID: 25951428
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DendroPy: a Python library for phylogenetic computing.
    Sukumaran J; Holder MT
    Bioinformatics; 2010 Jun; 26(12):1569-71. PubMed ID: 20421198
    [TBL] [Abstract][Full Text] [Related]  

  • 9. eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows.
    Kiefer P; Schmitt U; Vorholt JA
    Bioinformatics; 2013 Apr; 29(7):963-4. PubMed ID: 23418185
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A collection of open source applications for mass spectrometry data mining.
    Gallardo Ó; Ovelleiro D; Gay M; Carrascal M; Abian J
    Proteomics; 2014 Oct; 14(20):2275-9. PubMed ID: 25055762
    [TBL] [Abstract][Full Text] [Related]  

  • 11. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results.
    Muth T; Vaudel M; Barsnes H; Martens L; Sickmann A
    Proteomics; 2010 Apr; 10(7):1522-4. PubMed ID: 20140905
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Prequips--an extensible software platform for integration, visualization and analysis of LC-MS/MS proteomics data.
    Gehlenborg N; Yan W; Lee IY; Yoo H; Nieselt K; Hwang D; Aebersold R; Hood L
    Bioinformatics; 2009 Mar; 25(5):682-3. PubMed ID: 19129212
    [TBL] [Abstract][Full Text] [Related]  

  • 13. AlphaPeptStats: an open-source Python package for automated and scalable statistical analysis of mass spectrometry-based proteomics.
    Krismer E; Bludau I; Strauss MT; Mann M
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37527012
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Installation and use of the Computational Proteomics Analysis System (CPAS).
    Myers T; Law W; Eng JK; McIntosh M
    Curr Protoc Bioinformatics; 2007 Jun; Chapter 13():Unit 13.5. PubMed ID: 18428786
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ProteoWizard: open source software for rapid proteomics tools development.
    Kessner D; Chambers M; Burke R; Agus D; Mallick P
    Bioinformatics; 2008 Nov; 24(21):2534-6. PubMed ID: 18606607
    [TBL] [Abstract][Full Text] [Related]  

  • 16. rTANDEM, an R/Bioconductor package for MS/MS protein identification.
    Fournier F; Joly Beauparlant C; Paradis R; Droit A
    Bioinformatics; 2014 Aug; 30(15):2233-4. PubMed ID: 24700319
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Software platform for rapidly creating computational tools for mass spectrometry-based proteomics.
    May D; Law W; Fitzgibbon M; Fang Q; McIntosh M
    J Proteome Res; 2009 Jun; 8(6):3212-7. PubMed ID: 19309175
    [TBL] [Abstract][Full Text] [Related]  

  • 18. [Comparative Analysis of the Performance of Mascot and IdentiPy Algorithms on a Benchmark Dataset Obtained by Tandem Mass Spectrometry Analysis of Testicular Biopsies].
    Lisitsa AV; Petushkova NA; Levitsky LI; Zgoda VG; Larina OV; Kisrieva YS; Frankevich VE; Gamidov SI
    Mol Biol (Mosk); 2019; 53(1):166-176. PubMed ID: 30895964
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Mining Large Scale Tandem Mass Spectrometry Data for Protein Modifications Using Spectral Libraries.
    Horlacher O; Lisacek F; Müller M
    J Proteome Res; 2016 Mar; 15(3):721-31. PubMed ID: 26653734
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
    Jaitly N; Mayampurath A; Littlefield K; Adkins JN; Anderson GA; Smith RD
    BMC Bioinformatics; 2009 Mar; 10():87. PubMed ID: 19292916
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.