These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

246 related articles for article (PubMed ID: 23343604)

  • 1. SwarmDock: a server for flexible protein-protein docking.
    Torchala M; Moal IH; Chaleil RA; Fernandez-Recio J; Bates PA
    Bioinformatics; 2013 Mar; 29(6):807-9. PubMed ID: 23343604
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The RosettaDock server for local protein-protein docking.
    Lyskov S; Gray JJ
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W233-8. PubMed ID: 18442991
    [TBL] [Abstract][Full Text] [Related]  

  • 3. pyDockWEB: a web server for rigid-body protein-protein docking using electrostatics and desolvation scoring.
    Jiménez-García B; Pons C; Fernández-Recio J
    Bioinformatics; 2013 Jul; 29(13):1698-9. PubMed ID: 23661696
    [TBL] [Abstract][Full Text] [Related]  

  • 4. New additions to the ClusPro server motivated by CAPRI.
    Vajda S; Yueh C; Beglov D; Bohnuud T; Mottarella SE; Xia B; Hall DR; Kozakov D
    Proteins; 2017 Mar; 85(3):435-444. PubMed ID: 27936493
    [TBL] [Abstract][Full Text] [Related]  

  • 5. pyDockSAXS: protein-protein complex structure by SAXS and computational docking.
    Jiménez-García B; Pons C; Svergun DI; Bernadó P; Fernández-Recio J
    Nucleic Acids Res; 2015 Jul; 43(W1):W356-61. PubMed ID: 25897115
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Predicting the structure of protein-protein complexes using the SwarmDock Web Server.
    Torchala M; Bates PA
    Methods Mol Biol; 2014; 1137():181-97. PubMed ID: 24573482
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Performance and Its Limits in Rigid Body Protein-Protein Docking.
    Desta IT; Porter KA; Xia B; Kozakov D; Vajda S
    Structure; 2020 Sep; 28(9):1071-1081.e3. PubMed ID: 32649857
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FireDock: a web server for fast interaction refinement in molecular docking.
    Mashiach E; Schneidman-Duhovny D; Andrusier N; Nussinov R; Wolfson HJ
    Nucleic Acids Res; 2008 Jul; 36(Web Server issue):W229-32. PubMed ID: 18424796
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Performance of the first protein docking server ClusPro in CAPRI rounds 3-5.
    Comeau SR; Vajda S; Camacho CJ
    Proteins; 2005 Aug; 60(2):239-44. PubMed ID: 15981265
    [TBL] [Abstract][Full Text] [Related]  

  • 10. CCharPPI web server: computational characterization of protein-protein interactions from structure.
    Moal IH; Jiménez-García B; Fernández-Recio J
    Bioinformatics; 2015 Jan; 31(1):123-5. PubMed ID: 25183488
    [TBL] [Abstract][Full Text] [Related]  

  • 11. HPEPDOCK: a web server for blind peptide-protein docking based on a hierarchical algorithm.
    Zhou P; Jin B; Li H; Huang SY
    Nucleic Acids Res; 2018 Jul; 46(W1):W443-W450. PubMed ID: 29746661
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HDOCK: a web server for protein-protein and protein-DNA/RNA docking based on a hybrid strategy.
    Yan Y; Zhang D; Zhou P; Li B; Huang SY
    Nucleic Acids Res; 2017 Jul; 45(W1):W365-W373. PubMed ID: 28521030
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Guide for Protein-Protein Docking Using SwarmDock.
    Moal IH; Chaleil RAG; Torchala M; Bates PA
    Methods Mol Biol; 2020; 2165():199-216. PubMed ID: 32621226
    [TBL] [Abstract][Full Text] [Related]  

  • 14. How good is automated protein docking?
    Kozakov D; Beglov D; Bohnuud T; Mottarella SE; Xia B; Hall DR; Vajda S
    Proteins; 2013 Dec; 81(12):2159-66. PubMed ID: 23996272
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-Protein and Protein-Peptide Docking with ClusPro Server.
    Alekseenko A; Ignatov M; Jones G; Sabitova M; Kozakov D
    Methods Mol Biol; 2020; 2165():157-174. PubMed ID: 32621224
    [TBL] [Abstract][Full Text] [Related]  

  • 16. ClusPro: performance in CAPRI rounds 6-11 and the new server.
    Comeau SR; Kozakov D; Brenke R; Shen Y; Beglov D; Vajda S
    Proteins; 2007 Dec; 69(4):781-5. PubMed ID: 17876812
    [TBL] [Abstract][Full Text] [Related]  

  • 17. FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking.
    Mashiach E; Nussinov R; Wolfson HJ
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W457-61. PubMed ID: 20460459
    [TBL] [Abstract][Full Text] [Related]  

  • 18. ClusPro: a fully automated algorithm for protein-protein docking.
    Comeau SR; Gatchell DW; Vajda S; Camacho CJ
    Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W96-9. PubMed ID: 15215358
    [TBL] [Abstract][Full Text] [Related]  

  • 19. HexServer: an FFT-based protein docking server powered by graphics processors.
    Macindoe G; Mavridis L; Venkatraman V; Devignes MD; Ritchie DW
    Nucleic Acids Res; 2010 Jul; 38(Web Server issue):W445-9. PubMed ID: 20444869
    [TBL] [Abstract][Full Text] [Related]  

  • 20. PRISM: a web server and repository for prediction of protein-protein interactions and modeling their 3D complexes.
    Baspinar A; Cukuroglu E; Nussinov R; Keskin O; Gursoy A
    Nucleic Acids Res; 2014 Jul; 42(Web Server issue):W285-9. PubMed ID: 24829450
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 13.