143 related articles for article (PubMed ID: 23349847)
1. HeurAA: accurate and fast detection of genetic variations with a novel heuristic amplicon aligner program for next generation sequencing.
Pongor LS; Pintér F; Peták I
PLoS One; 2013; 8(1):e54294. PubMed ID: 23349847
[TBL] [Abstract][Full Text] [Related]
2. INDELseek: detection of complex insertions and deletions from next-generation sequencing data.
Au CH; Leung AY; Kwong A; Chan TL; Ma ES
BMC Genomics; 2017 Jan; 18(1):16. PubMed ID: 28056804
[TBL] [Abstract][Full Text] [Related]
3. Amplicon Indel Hunter Is a Novel Bioinformatics Tool to Detect Large Somatic Insertion/Deletion Mutations in Amplicon-Based Next-Generation Sequencing Data.
Kadri S; Zhen CJ; Wurst MN; Long BC; Jiang ZF; Wang YL; Furtado LV; Segal JP
J Mol Diagn; 2015 Nov; 17(6):635-43. PubMed ID: 26319364
[TBL] [Abstract][Full Text] [Related]
4. Parallel and Scalable Short-Read Alignment on Multi-Core Clusters Using UPC+.
González-Domínguez J; Liu Y; Schmidt B
PLoS One; 2016; 11(1):e0145490. PubMed ID: 26731399
[TBL] [Abstract][Full Text] [Related]
5. Tool evaluation for the detection of variably sized indels from next generation whole genome and targeted sequencing data.
Wang N; Lysenkov V; Orte K; Kairisto V; Aakko J; Khan S; Elo LL
PLoS Comput Biol; 2022 Feb; 18(2):e1009269. PubMed ID: 35176018
[TBL] [Abstract][Full Text] [Related]
6. mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development.
Lv Y; Liu Y; Zhao H
BMC Genomics; 2016 Apr; 17():290. PubMed ID: 27079510
[TBL] [Abstract][Full Text] [Related]
7. Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations.
Sun Z; Bhagwate A; Prodduturi N; Yang P; Kocher JA
Brief Bioinform; 2017 Nov; 18(6):973-983. PubMed ID: 27473065
[TBL] [Abstract][Full Text] [Related]
8. SInC: an accurate and fast error-model based simulator for SNPs, Indels and CNVs coupled with a read generator for short-read sequence data.
Pattnaik S; Gupta S; Rao AA; Panda B
BMC Bioinformatics; 2014 Feb; 15():40. PubMed ID: 24495296
[TBL] [Abstract][Full Text] [Related]
9. CUSHAW3: sensitive and accurate base-space and color-space short-read alignment with hybrid seeding.
Liu Y; Popp B; Schmidt B
PLoS One; 2014; 9(1):e86869. PubMed ID: 24466273
[TBL] [Abstract][Full Text] [Related]
10. SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing.
Meglécz E; Piry S; Desmarais E; Galan M; Gilles A; Guivier E; Pech N; Martin JF
Bioinformatics; 2011 Jan; 27(2):277-8. PubMed ID: 21084284
[TBL] [Abstract][Full Text] [Related]
11. Uncovering missed indels by leveraging unmapped reads.
Hasan MS; Wu X; Zhang L
Sci Rep; 2019 Jul; 9(1):11093. PubMed ID: 31366961
[TBL] [Abstract][Full Text] [Related]
12. UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing.
Park DJ; Li R; Lau E; Georgeson P; Nguyen-Dumont T; Pope BJ
BMC Bioinformatics; 2016 Apr; 17():165. PubMed ID: 27083325
[TBL] [Abstract][Full Text] [Related]
13. Optimizing Insertion and Deletion Detection Using Next-Generation Sequencing in the Clinical Laboratory.
Craven KE; Fischer CG; Jiang L; Pallavajjala A; Lin MT; Eshleman JR
J Mol Diagn; 2022 Dec; 24(12):1217-1231. PubMed ID: 36162758
[TBL] [Abstract][Full Text] [Related]
14. ABRA: improved coding indel detection via assembly-based realignment.
Mose LE; Wilkerson MD; Hayes DN; Perou CM; Parker JS
Bioinformatics; 2014 Oct; 30(19):2813-5. PubMed ID: 24907369
[TBL] [Abstract][Full Text] [Related]
15. Bioinformatics Basics for High-Throughput Hybridization-Based Targeted DNA Sequencing from FFPE-Derived Tumor Specimens: From Reads to Variants.
Sun S; Murray SS
Methods Mol Biol; 2019; 1908():37-48. PubMed ID: 30649719
[TBL] [Abstract][Full Text] [Related]
16. VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.
Lai Z; Markovets A; Ahdesmaki M; Chapman B; Hofmann O; McEwen R; Johnson J; Dougherty B; Barrett JC; Dry JR
Nucleic Acids Res; 2016 Jun; 44(11):e108. PubMed ID: 27060149
[TBL] [Abstract][Full Text] [Related]
17. NGS_SNPAnalyzer: a desktop software supporting genome projects by identifying and visualizing sequence variations from next-generation sequencing data.
Lee DJ; Kwon T; Kim CK; Seol YJ; Park DS; Lee TH; Ahn BO
Genes Genomics; 2020 Nov; 42(11):1311-1317. PubMed ID: 32980993
[TBL] [Abstract][Full Text] [Related]
18. Targeted capture-based NGS is superior to multiplex PCR-based NGS for hereditary BRCA1 and BRCA2 gene analysis in FFPE tumor samples.
Zakrzewski F; Gieldon L; Rump A; Seifert M; Grützmann K; Krüger A; Loos S; Zeugner S; Hackmann K; Porrmann J; Wagner J; Kast K; Wimberger P; Baretton G; Schröck E; Aust D; Klink B
BMC Cancer; 2019 Apr; 19(1):396. PubMed ID: 31029168
[TBL] [Abstract][Full Text] [Related]
19. AmpliVar: mutation detection in high-throughput sequence from amplicon-based libraries.
Hsu AL; Kondrashova O; Lunke S; Love CJ; Meldrum C; Marquis-Nicholson R; Corboy G; Pham K; Wakefield M; Waring PM; Taylor GR
Hum Mutat; 2015 Apr; 36(4):411-8. PubMed ID: 25664426
[TBL] [Abstract][Full Text] [Related]
20. HISEA: HIerarchical SEed Aligner for PacBio data.
Khiste N; Ilie L
BMC Bioinformatics; 2017 Dec; 18(1):564. PubMed ID: 29258419
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
