202 related articles for article (PubMed ID: 23359167)
1. Pooled shRNA screenings: computational analysis.
Yu J; Putcha P; Califano A; Silva JM
Methods Mol Biol; 2013; 980():371-84. PubMed ID: 23359167
[TBL] [Abstract][Full Text] [Related]
2. Pooled shRNA screenings: experimental approach.
Rodriguez-Barrueco R; Marshall N; Silva JM
Methods Mol Biol; 2013; 980():353-70. PubMed ID: 23359166
[TBL] [Abstract][Full Text] [Related]
3. Using pooled miR30-shRNA library for cancer lethal and synthetic lethal screens.
Lee LC; Gao S; Li Q; Luo J
Methods Mol Biol; 2014; 1176():45-58. PubMed ID: 25030918
[TBL] [Abstract][Full Text] [Related]
4. Pooled lentiviral shRNA screening for functional genomics in mammalian cells.
Blakely K; Ketela T; Moffat J
Methods Mol Biol; 2011; 781():161-82. PubMed ID: 21877282
[TBL] [Abstract][Full Text] [Related]
5. Small RNA discovery and characterisation in eukaryotes using high-throughput approaches.
Pais H; Moxon S; Dalmay T; Moulton V
Adv Exp Med Biol; 2011; 722():239-54. PubMed ID: 21915794
[TBL] [Abstract][Full Text] [Related]
6. Generation of plant small RNA cDNA libraries for high-throughput sequencing.
Zhu QH; Helliwell CA
Methods Mol Biol; 2012; 894():123-37. PubMed ID: 22678577
[TBL] [Abstract][Full Text] [Related]
7. Target discovery screens using pooled shRNA libraries and next-generation sequencing: A model workflow and analytical algorithm.
Schaefer C; Mallela N; Seggewiß J; Lechtape B; Omran H; Dirksen U; Korsching E; Potratz J
PLoS One; 2018; 13(1):e0191570. PubMed ID: 29385199
[TBL] [Abstract][Full Text] [Related]
8. High-throughput RNA interference screening using pooled shRNA libraries and next generation sequencing.
Sims D; Mendes-Pereira AM; Frankum J; Burgess D; Cerone MA; Lombardelli C; Mitsopoulos C; Hakas J; Murugaesu N; Isacke CM; Fenwick K; Assiotis I; Kozarewa I; Zvelebil M; Ashworth A; Lord CJ
Genome Biol; 2011 Oct; 12(10):R104. PubMed ID: 22018332
[TBL] [Abstract][Full Text] [Related]
9. BiNGS!SL-seq: a bioinformatics pipeline for the analysis and interpretation of deep sequencing genome-wide synthetic lethal screen.
Kim J; Tan AC
Methods Mol Biol; 2012; 802():389-98. PubMed ID: 22130895
[TBL] [Abstract][Full Text] [Related]
10. Next-generation libraries for robust RNA interference-based genome-wide screens.
Kampmann M; Horlbeck MA; Chen Y; Tsai JC; Bassik MC; Gilbert LA; Villalta JE; Kwon SC; Chang H; Kim VN; Weissman JS
Proc Natl Acad Sci U S A; 2015 Jun; 112(26):E3384-91. PubMed ID: 26080438
[TBL] [Abstract][Full Text] [Related]
11. An overview of the analysis of next generation sequencing data.
Gogol-Döring A; Chen W
Methods Mol Biol; 2012; 802():249-57. PubMed ID: 22130885
[TBL] [Abstract][Full Text] [Related]
12. RNAi microarray analysis in cultured mammalian cells.
Mousses S; Caplen NJ; Cornelison R; Weaver D; Basik M; Hautaniemi S; Elkahloun AG; Lotufo RA; Choudary A; Dougherty ER; Suh E; Kallioniemi O
Genome Res; 2003 Oct; 13(10):2341-7. PubMed ID: 14525932
[TBL] [Abstract][Full Text] [Related]
13. Computational identification of cellular networks and pathways.
Markowetz F; Troyanskaya OG
Mol Biosyst; 2007 Jul; 3(7):478-82. PubMed ID: 17579773
[TBL] [Abstract][Full Text] [Related]
14. Enzymatic production of RNAi libraries from cDNAs and high-throughput selection of effective shRNA expression constructs.
Sugao K; Hirose K
Methods Mol Biol; 2011; 729():123-39. PubMed ID: 21365487
[TBL] [Abstract][Full Text] [Related]
15. Is this the real time for genomics?
Guarnaccia M; Gentile G; Alessi E; Schneider C; Petralia S; Cavallaro S
Genomics; 2014; 103(2-3):177-82. PubMed ID: 24560816
[TBL] [Abstract][Full Text] [Related]
16. A primer on using pooled shRNA libraries for functional genomic screens.
Hu G; Luo J
Acta Biochim Biophys Sin (Shanghai); 2012 Feb; 44(2):103-12. PubMed ID: 22271906
[TBL] [Abstract][Full Text] [Related]
17. Studying cancer genomics through next-generation DNA sequencing and bioinformatics.
Doyle MA; Li J; Doig K; Fellowes A; Wong SQ
Methods Mol Biol; 2014; 1168():83-98. PubMed ID: 24870132
[TBL] [Abstract][Full Text] [Related]
18. Computational approaches to analysis of DNA microarray data.
Quackenbush J
Yearb Med Inform; 2006; ():91-103. PubMed ID: 17051302
[TBL] [Abstract][Full Text] [Related]
19. Bioinformatics analysis of small RNAs in plants using next generation sequencing technologies.
Nobuta K; McCormick K; Nakano M; Meyers BC
Methods Mol Biol; 2010; 592():89-106. PubMed ID: 19802591
[TBL] [Abstract][Full Text] [Related]
20. Application of high-throughput DNA sequencing in phytopathology.
Studholme DJ; Glover RH; Boonham N
Annu Rev Phytopathol; 2011; 49():87-105. PubMed ID: 21548771
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
