296 related articles for article (PubMed ID: 23361200)
1. Microsecond folding experiments and simulations: a match is made.
Prigozhin MB; Gruebele M
Phys Chem Chem Phys; 2013 Mar; 15(10):3372-88. PubMed ID: 23361200
[TBL] [Abstract][Full Text] [Related]
2. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
3. Ten-microsecond molecular dynamics simulation of a fast-folding WW domain.
Freddolino PL; Liu F; Gruebele M; Schulten K
Biophys J; 2008 May; 94(10):L75-7. PubMed ID: 18339748
[TBL] [Abstract][Full Text] [Related]
4. Microsecond scale replica exchange molecular dynamic simulation of villin headpiece: an insight into the folding landscape.
Jani V; Sonavane UB; Joshi R
J Biomol Struct Dyn; 2011 Jun; 28(6):845-60. PubMed ID: 21469746
[TBL] [Abstract][Full Text] [Related]
5. Atomic-level description of ubiquitin folding.
Piana S; Lindorff-Larsen K; Shaw DE
Proc Natl Acad Sci U S A; 2013 Apr; 110(15):5915-20. PubMed ID: 23503848
[TBL] [Abstract][Full Text] [Related]
6. How robust are protein folding simulations with respect to force field parameterization?
Piana S; Lindorff-Larsen K; Shaw DE
Biophys J; 2011 May; 100(9):L47-9. PubMed ID: 21539772
[TBL] [Abstract][Full Text] [Related]
7. Lessons about Protein Folding and Binding from Archetypal Folds.
Campos LA; Sadqi M; Muñoz V
Acc Chem Res; 2020 Oct; 53(10):2180-2188. PubMed ID: 32914959
[TBL] [Abstract][Full Text] [Related]
8. Molecular dynamics with the united-residue model of polypeptide chains. II. Langevin and Berendsen-bath dynamics and tests on model alpha-helical systems.
Khalili M; Liwo A; Jagielska A; Scheraga HA
J Phys Chem B; 2005 Jul; 109(28):13798-810. PubMed ID: 16852728
[TBL] [Abstract][Full Text] [Related]
9. Microsecond simulations of the folding/unfolding thermodynamics of the Trp-cage miniprotein.
Day R; Paschek D; Garcia AE
Proteins; 2010 Jun; 78(8):1889-99. PubMed ID: 20408169
[TBL] [Abstract][Full Text] [Related]
10. Simulation of folding of a small alpha-helical protein in atomistic detail using worldwide-distributed computing.
Zagrovic B; Snow CD; Shirts MR; Pande VS
J Mol Biol; 2002 Nov; 323(5):927-37. PubMed ID: 12417204
[TBL] [Abstract][Full Text] [Related]
11. Peptide loop-closure kinetics from microsecond molecular dynamics simulations in explicit solvent.
Yeh IC; Hummer G
J Am Chem Soc; 2002 Jun; 124(23):6563-8. PubMed ID: 12047175
[TBL] [Abstract][Full Text] [Related]
12. Comparing Fast Pressure Jump and Temperature Jump Protein Folding Experiments and Simulations.
Wirth AJ; Liu Y; Prigozhin MB; Schulten K; Gruebele M
J Am Chem Soc; 2015 Jun; 137(22):7152-7159. PubMed ID: 25988868
[TBL] [Abstract][Full Text] [Related]
13. Tackling force-field bias in protein folding simulations: folding of Villin HP35 and Pin WW domains in explicit water.
Mittal J; Best RB
Biophys J; 2010 Aug; 99(3):L26-8. PubMed ID: 20682244
[TBL] [Abstract][Full Text] [Related]
14. Folding simulations of a de novo designed protein with a betaalphabeta fold.
Qi Y; Huang Y; Liang H; Liu Z; Lai L
Biophys J; 2010 Jan; 98(2):321-9. PubMed ID: 20338854
[TBL] [Abstract][Full Text] [Related]
15. Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations.
Piana S; Klepeis JL; Shaw DE
Curr Opin Struct Biol; 2014 Feb; 24():98-105. PubMed ID: 24463371
[TBL] [Abstract][Full Text] [Related]
16. Slow unfolded-state structuring in Acyl-CoA binding protein folding revealed by simulation and experiment.
Voelz VA; Jäger M; Yao S; Chen Y; Zhu L; Waldauer SA; Bowman GR; Friedrichs M; Bakajin O; Lapidus LJ; Weiss S; Pande VS
J Am Chem Soc; 2012 Aug; 134(30):12565-77. PubMed ID: 22747188
[TBL] [Abstract][Full Text] [Related]
17. Force field influences in beta-hairpin folding simulations.
Lwin TZ; Luo R
Protein Sci; 2006 Nov; 15(11):2642-55. PubMed ID: 17075138
[TBL] [Abstract][Full Text] [Related]
18. Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations.
Lei H; Wu C; Wang ZX; Zhou Y; Duan Y
J Chem Phys; 2008 Jun; 128(23):235105. PubMed ID: 18570534
[TBL] [Abstract][Full Text] [Related]
19. Folding simulations for proteins with diverse topologies are accessible in days with a physics-based force field and implicit solvent.
Nguyen H; Maier J; Huang H; Perrone V; Simmerling C
J Am Chem Soc; 2014 Oct; 136(40):13959-62. PubMed ID: 25255057
[TBL] [Abstract][Full Text] [Related]
20. Downhill versus barrier-limited folding of BBL 3. Heterogeneity of the native state of the BBL peripheral subunit binding domain and its implications for folding mechanisms.
Settanni G; Fersht AR
J Mol Biol; 2009 Apr; 387(4):993-1001. PubMed ID: 19217911
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]