163 related articles for article (PubMed ID: 23368905)
1. Characterising RNA secondary structure space using information entropy.
Sükösd Z; Knudsen B; Anderson JW; Novák A; Kjems J; Pedersen CN
BMC Bioinformatics; 2013; 14 Suppl 2(Suppl 2):S22. PubMed ID: 23368905
[TBL] [Abstract][Full Text] [Related]
2. SCFGs in RNA secondary structure prediction RNA secondary structure prediction: a hands-on approach.
Sükösd Z; Andersen ES; Lyngsø R
Methods Mol Biol; 2014; 1097():143-62. PubMed ID: 24639159
[TBL] [Abstract][Full Text] [Related]
3. StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.
Arunapuram P; Edvardsson I; Golden M; Anderson JW; Novák A; Sükösd Z; Hein J
Bioinformatics; 2013 Mar; 29(5):654-5. PubMed ID: 23335014
[TBL] [Abstract][Full Text] [Related]
4. Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars.
Sükösd Z; Knudsen B; Vaerum M; Kjems J; Andersen ES
BMC Bioinformatics; 2011 Apr; 12():103. PubMed ID: 21501497
[TBL] [Abstract][Full Text] [Related]
5. PPfold 3.0: fast RNA secondary structure prediction using phylogeny and auxiliary data.
Sükösd Z; Knudsen B; Kjems J; Pedersen CN
Bioinformatics; 2012 Oct; 28(20):2691-2. PubMed ID: 22877864
[TBL] [Abstract][Full Text] [Related]
6. Quantifying variances in comparative RNA secondary structure prediction.
Anderson JW; Novák Á; Sükösd Z; Golden M; Arunapuram P; Edvardsson I; Hein J
BMC Bioinformatics; 2013 May; 14():149. PubMed ID: 23634662
[TBL] [Abstract][Full Text] [Related]
7. RNA Thermodynamic Structural Entropy.
Garcia-Martin JA; Clote P
PLoS One; 2015; 10(11):e0137859. PubMed ID: 26555444
[TBL] [Abstract][Full Text] [Related]
8. Accelerated probabilistic inference of RNA structure evolution.
Holmes I
BMC Bioinformatics; 2005 Mar; 6():73. PubMed ID: 15790387
[TBL] [Abstract][Full Text] [Related]
9. Evaluation of several lightweight stochastic context-free grammars for RNA secondary structure prediction.
Dowell RD; Eddy SR
BMC Bioinformatics; 2004 Jun; 5():71. PubMed ID: 15180907
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of a sophisticated SCFG design for RNA secondary structure prediction.
Nebel ME; Scheid A
Theory Biosci; 2011 Dec; 130(4):313-36. PubMed ID: 22135038
[TBL] [Abstract][Full Text] [Related]
11. RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.
Knudsen B; Hein J
Bioinformatics; 1999 Jun; 15(6):446-54. PubMed ID: 10383470
[TBL] [Abstract][Full Text] [Related]
12. CONTRAfold: RNA secondary structure prediction without physics-based models.
Do CB; Woods DA; Batzoglou S
Bioinformatics; 2006 Jul; 22(14):e90-8. PubMed ID: 16873527
[TBL] [Abstract][Full Text] [Related]
13. Evolving stochastic context--free grammars for RNA secondary structure prediction.
Wj Anderson J; Tataru P; Staines J; Hein J; Lyngsø R
BMC Bioinformatics; 2012 May; 13():78. PubMed ID: 22559985
[TBL] [Abstract][Full Text] [Related]
14. Pfold: RNA secondary structure prediction using stochastic context-free grammars.
Knudsen B; Hein J
Nucleic Acids Res; 2003 Jul; 31(13):3423-8. PubMed ID: 12824339
[TBL] [Abstract][Full Text] [Related]
15. Memory efficient alignment between RNA sequences and stochastic grammar models of pseudoknots.
Song Y; Liu C; Malmberg RL; He C; Cai L
Int J Bioinform Res Appl; 2006; 2(3):289-304. PubMed ID: 18048167
[TBL] [Abstract][Full Text] [Related]
16. Evaluating the effect of disturbed ensemble distributions on SCFG based statistical sampling of RNA secondary structures.
Scheid A; Nebel ME
BMC Bioinformatics; 2012 Jul; 13():159. PubMed ID: 22776037
[TBL] [Abstract][Full Text] [Related]
17. TurboFold: iterative probabilistic estimation of secondary structures for multiple RNA sequences.
Harmanci AO; Sharma G; Mathews DH
BMC Bioinformatics; 2011 Apr; 12():108. PubMed ID: 21507242
[TBL] [Abstract][Full Text] [Related]
18. Pair stochastic tree adjoining grammars for aligning and predicting pseudoknot RNA structures.
Matsui H; Sato K; Sakakibara Y
Proc IEEE Comput Syst Bioinform Conf; 2004; ():290-9. PubMed ID: 16448022
[TBL] [Abstract][Full Text] [Related]
19. Pairwise RNA structure comparison with stochastic context-free grammars.
Holmes I; Rubin GM
Pac Symp Biocomput; 2002; ():163-74. PubMed ID: 11928472
[TBL] [Abstract][Full Text] [Related]
20. Capturing alternative secondary structures of RNA by decomposition of base-pairing probabilities.
Hagio T; Sakuraba S; Iwakiri J; Mori R; Asai K
BMC Bioinformatics; 2018 Feb; 19(Suppl 1):38. PubMed ID: 29504917
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]