BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

278 related articles for article (PubMed ID: 23383995)

  • 1. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data.
    He D; Han B; Eskin E
    J Comput Biol; 2013 Feb; 20(2):80-92. PubMed ID: 23383995
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
    Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
    Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hap-seqX: expedite algorithm for haplotype phasing with imputation using sequence data.
    He D; Eskin E
    Gene; 2013 Apr; 518(1):2-6. PubMed ID: 23269365
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient algorithms for polyploid haplotype phasing.
    He D; Saha S; Finkers R; Parida L
    BMC Genomics; 2018 May; 19(Suppl 2):110. PubMed ID: 29764364
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Optimal algorithms for haplotype assembly from whole-genome sequence data.
    He D; Choi A; Pipatsrisawat K; Darwiche A; Eskin E
    Bioinformatics; 2010 Jun; 26(12):i183-90. PubMed ID: 20529904
    [TBL] [Abstract][Full Text] [Related]  

  • 6. GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
    Tangherloni A; Spolaor S; Rundo L; Nobile MS; Cazzaniga P; Mauri G; LiĆ² P; Merelli I; Besozzi D
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):172. PubMed ID: 30999845
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes.
    Hickey JM; Kinghorn BP; Tier B; Wilson JF; Dunstan N; van der Werf JH
    Genet Sel Evol; 2011 Mar; 43(1):12. PubMed ID: 21388557
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
    Bansal V
    Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
    [TBL] [Abstract][Full Text] [Related]  

  • 9. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences.
    Fruzangohar M; Timmins WA; Kravchuk O; Taylor J
    Gigascience; 2022 May; 11():. PubMed ID: 35579550
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Phasing for medical sequencing using rare variants and large haplotype reference panels.
    Sharp K; Kretzschmar W; Delaneau O; Marchini J
    Bioinformatics; 2016 Jul; 32(13):1974-80. PubMed ID: 27153703
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold.
    Menelaou A; Marchini J
    Bioinformatics; 2013 Jan; 29(1):84-91. PubMed ID: 23093610
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Graph-Based Imputation Methods and Their Applications to Single Donors and Families.
    Israeli S; Maiers M; Louzoun Y
    Methods Mol Biol; 2024; 2809():193-214. PubMed ID: 38907899
    [TBL] [Abstract][Full Text] [Related]  

  • 13. HapCHAT: adaptive haplotype assembly for efficiently leveraging high coverage in long reads.
    Beretta S; Patterson MD; Zaccaria S; Della Vedova G; Bonizzoni P
    BMC Bioinformatics; 2018 Jul; 19(1):252. PubMed ID: 29970002
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identity-by-descent-based phasing and imputation in founder populations using graphical models.
    Palin K; Campbell H; Wright AF; Wilson JF; Durbin R
    Genet Epidemiol; 2011 Dec; 35(8):853-60. PubMed ID: 22006673
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data.
    Aguiar D; Istrail S
    J Comput Biol; 2012 Jun; 19(6):577-90. PubMed ID: 22697235
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Estimation of haplotype frequencies, linkage-disequilibrium measures, and combination of haplotype copies in each pool by use of pooled DNA data.
    Ito T; Chiku S; Inoue E; Tomita M; Morisaki T; Morisaki H; Kamatani N
    Am J Hum Genet; 2003 Feb; 72(2):384-98. PubMed ID: 12533787
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes.
    Ferdosi MH; Kinghorn BP; van der Werf JH; Gondro C
    Genet Sel Evol; 2014 Feb; 46(1):11. PubMed ID: 24495596
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Haplotyping and estimation of haplotype frequencies for closely linked biallelic multilocus genetic phenotypes including nuclear family information.
    Rohde K; Fuerst R
    Hum Mutat; 2001 Apr; 17(4):289-95. PubMed ID: 11295827
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.
    Zhang K; Zhi D
    Bioinformatics; 2013 Oct; 29(19):2427-34. PubMed ID: 23943637
    [TBL] [Abstract][Full Text] [Related]  

  • 20. HLA haplotype frequency estimation for heterogeneous populations using a graph-based imputation algorithm.
    Israeli S; Gragert L; Maiers M; Louzoun Y
    Hum Immunol; 2021 Oct; 82(10):746-757. PubMed ID: 34325951
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.