BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

215 related articles for article (PubMed ID: 23383997)

  • 1. Probabilistic inference of viral quasispecies subject to recombination.
    Töpfer A; Zagordi O; Prabhakaran S; Roth V; Halperin E; Beerenwinkel N
    J Comput Biol; 2013 Feb; 20(2):113-23. PubMed ID: 23383997
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing.
    Hora B; Gulzar N; Chen Y; Karagiannis K; Cai F; Su C; Smith K; Simonyan V; Shah SA; Ahmed M; Sanchez AM; Stone M; Cohen MS; Denny TN; Mazumder R; Gao F
    mSphere; 2020 Oct; 5(5):. PubMed ID: 33055255
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients.
    Charpentier C; Nora T; Tenaillon O; Clavel F; Hance AJ
    J Virol; 2006 Mar; 80(5):2472-82. PubMed ID: 16474154
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The Genetic Diversity of HIV-1 Quasispecies Within Primary Infected Individuals.
    Liu Y; Jia L; Su B; Li H; Li Z; Han J; Zhang Y; Zhang T; Li T; Wu H; Li J; Li L
    AIDS Res Hum Retroviruses; 2020 May; 36(5):440-449. PubMed ID: 31766855
    [TBL] [Abstract][Full Text] [Related]  

  • 5. aBayesQR: A Bayesian Method for Reconstruction of Viral Populations Characterized by Low Diversity.
    Ahn S; Vikalo H
    J Comput Biol; 2018 Jul; 25(7):637-648. PubMed ID: 29480740
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.
    Dialdestoro K; Sibbesen JA; Maretty L; Raghwani J; Gall A; Kellam P; Pybus OG; Hein J; Jenkins PA
    Genetics; 2016 Apr; 202(4):1449-72. PubMed ID: 26857628
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Inferring viral quasispecies spectra from 454 pyrosequencing reads.
    Astrovskaya I; Tork B; Mangul S; Westbrooks K; Măndoiu I; Balfe P; Zelikovsky A
    BMC Bioinformatics; 2011; 12 Suppl 6(Suppl 6):S1. PubMed ID: 21989211
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Intercompartmental recombination of HIV-1 contributes to env intrahost diversity and modulates viral tropism and sensitivity to entry inhibitors.
    Brown RJ; Peters PJ; Caron C; Gonzalez-Perez MP; Stones L; Ankghuambom C; Pondei K; McClure CP; Alemnji G; Taylor S; Sharp PM; Clapham PR; Ball JK
    J Virol; 2011 Jun; 85(12):6024-37. PubMed ID: 21471230
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Longitudinal quasispecies analysis of viral variants in HIV type 1 dually infected individuals highlights the importance of sequence identity in viral recombination.
    Powell RL; Lezeau L; Kinge T; Nyambi PN
    AIDS Res Hum Retroviruses; 2010 Mar; 26(3):253-64. PubMed ID: 20334562
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Analysis of HIV quasispecies suggests compartmentalization in the liver.
    Penton PK; Blackard JT
    AIDS Res Hum Retroviruses; 2014 Apr; 30(4):394-402. PubMed ID: 24074301
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Viral quasispecies reconstruction via tensor factorization with successive read removal.
    Ahn S; Ke Z; Vikalo H
    Bioinformatics; 2018 Jul; 34(13):i23-i31. PubMed ID: 29949976
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Deep Sequencing of the HIV-1 env Gene Reveals Discrete X4 Lineages and Linkage Disequilibrium between X4 and R5 Viruses in the V1/V2 and V3 Variable Regions.
    Zhou S; Bednar MM; Sturdevant CB; Hauser BM; Swanstrom R
    J Virol; 2016 Aug; 90(16):7142-58. PubMed ID: 27226378
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The Transmission and Evolution of HIV-1 Quasispecies within One Couple: a Follow-up Study based on Next-Generation Sequencing.
    Yu F; Wen Y; Wang J; Gong Y; Feng K; Ye R; Jiang Y; Zhao Q; Pan P; Wu H; Duan S; Su B; Qiu M
    Sci Rep; 2018 Jan; 8(1):1404. PubMed ID: 29362487
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing.
    Salazar-Gonzalez JF; Bailes E; Pham KT; Salazar MG; Guffey MB; Keele BF; Derdeyn CA; Farmer P; Hunter E; Allen S; Manigart O; Mulenga J; Anderson JA; Swanstrom R; Haynes BF; Athreya GS; Korber BT; Sharp PM; Shaw GM; Hahn BH
    J Virol; 2008 Apr; 82(8):3952-70. PubMed ID: 18256145
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Rare HIV-1 Subtype J Genomes and a New H/U/CRF02_AG Recombinant Genome Suggests an Ancient Origin of HIV-1 in Angola.
    Bártolo I; Calado R; Borrego P; Leitner T; Taveira N
    AIDS Res Hum Retroviruses; 2016 Aug; 32(8):822-8. PubMed ID: 27098898
    [TBL] [Abstract][Full Text] [Related]  

  • 16. HIV sequence diversity during the early phase of infection is associated with HIV DNA reductions during antiretroviral therapy.
    Wang N; Li Y; Han Y; Xie J; Li T
    J Med Virol; 2017 Jun; 89(6):982-988. PubMed ID: 27791274
    [TBL] [Abstract][Full Text] [Related]  

  • 17. HIV types, groups, subtypes and recombinant forms: errors in replication, selection pressure and quasispecies.
    Eberle J; Gürtler L
    Intervirology; 2012; 55(2):79-83. PubMed ID: 22286874
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Evolution of HIV-1 quasispecies and coreceptor use in cell reservoirs of patients on suppressive antiretroviral therapy.
    Raymond S; Saliou A; Delobel P; Cazabat M; Pasquier C; Jeanne N; Sauné K; Massip P; Marchou B; Izopet J
    J Antimicrob Chemother; 2014 Sep; 69(9):2527-30. PubMed ID: 24840625
    [TBL] [Abstract][Full Text] [Related]  

  • 19. QColors: an algorithm for conservative viral quasispecies reconstruction from short and non-contiguous next generation sequencing reads.
    Huang A; Kantor R; DeLong A; Schreier L; Istrail S
    In Silico Biol; 2011-2012; 11(5-6):193-201. PubMed ID: 23202421
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Massively parallel pyrosequencing highlights minority variants in the HIV-1 env quasispecies deriving from lymphomonocyte sub-populations.
    Rozera G; Abbate I; Bruselles A; Vlassi C; D'Offizi G; Narciso P; Chillemi G; Prosperi M; Ippolito G; Capobianchi MR
    Retrovirology; 2009 Feb; 6():15. PubMed ID: 19216757
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.