These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

65 related articles for article (PubMed ID: 23386427)

  • 1. RNA dot plots: an image representation for RNA secondary structure analysis and manipulations.
    Churkin A; Barash D
    Wiley Interdiscip Rev RNA; 2013; 4(2):205-16. PubMed ID: 23386427
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predicting a set of minimal free energy RNA secondary structures common to two sequences.
    Mathews DH
    Bioinformatics; 2005 May; 21(10):2246-53. PubMed ID: 15731207
    [TBL] [Abstract][Full Text] [Related]  

  • 3. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A method for aligning RNA secondary structures and its application to RNA motif detection.
    Liu J; Wang JT; Hu J; Tian B
    BMC Bioinformatics; 2005 Apr; 6():89. PubMed ID: 15817128
    [TBL] [Abstract][Full Text] [Related]  

  • 5. An image processing approach to computing distances between RNA secondary structures dot plots.
    Ivry T; Michal S; Avihoo A; Sapiro G; Barash D
    Algorithms Mol Biol; 2009 Feb; 4():4. PubMed ID: 19203377
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Structural analysis by energy dot plot of a large mRNA.
    Jacobson AB; Zuker M
    J Mol Biol; 1993 Sep; 233(2):261-9. PubMed ID: 8377202
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Displaying 3D data on RNA secondary structures: coloRNA.
    LeBarron J; Mitra K; Frank J
    J Struct Biol; 2007 Jan; 157(1):262-70. PubMed ID: 17070699
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Stepping through an RNA structure: A novel approach to conformational analysis.
    Duarte CM; Pyle AM
    J Mol Biol; 1998 Dec; 284(5):1465-78. PubMed ID: 9878364
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Sequence to Structure (S2S): display, manipulate and interconnect RNA data from sequence to structure.
    Jossinet F; Westhof E
    Bioinformatics; 2005 Aug; 21(15):3320-1. PubMed ID: 15905274
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Identifying complete RNA structural ensembles including pseudoknots.
    Gupta A; Rahman R; Li K; Gribskov M
    RNA Biol; 2012 Feb; 9(2):187-99. PubMed ID: 22418849
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Classification of RNA secondary structures using the techniques of cluster analysis.
    Nakaya A; Yonezawa A; Yamamoto K
    J Theor Biol; 1996 Nov; 183(1):105-17. PubMed ID: 8959113
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Fuzzy kernel clustering of RNA secondary structure ensemble using a novel similarity metric.
    Liu Q; Zhang Y; Xu Y; Ye X
    J Biomol Struct Dyn; 2008 Jun; 25(6):685-96. PubMed ID: 18399702
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Secondary structure prediction of interacting RNA molecules.
    Andronescu M; Zhang ZC; Condon A
    J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Prediction of RNA pseudoknots using heuristic modeling with mapping and sequential folding.
    Dawson WK; Fujiwara K; Kawai G
    PLoS One; 2007 Sep; 2(9):e905. PubMed ID: 17878940
    [TBL] [Abstract][Full Text] [Related]  

  • 15. An interactive framework for RNA secondary structure prediction with a dynamical treatment of constraints.
    Gaspin C; Westhof E
    J Mol Biol; 1995 Nov; 254(2):163-74. PubMed ID: 7490740
    [TBL] [Abstract][Full Text] [Related]  

  • 16. On the algebraic representation of RNA secondary structures with G x U pairs.
    Casasnovas J; Miro-Julia J; Rosselló F
    J Math Biol; 2003 Jul; 47(1):1-22. PubMed ID: 12827446
    [TBL] [Abstract][Full Text] [Related]  

  • 17. 2D-RNA-coupling numbers: a new computational chemistry approach to link secondary structure topology with biological function.
    González-Díaz H; Agüero-Chapin G; Varona J; Molina R; Delogu G; Santana L; Uriarte E; Podda G
    J Comput Chem; 2007 Apr; 28(6):1049-56. PubMed ID: 17279496
    [TBL] [Abstract][Full Text] [Related]  

  • 18. 4SALE--a tool for synchronous RNA sequence and secondary structure alignment and editing.
    Seibel PN; Müller T; Dandekar T; Schultz J; Wolf M
    BMC Bioinformatics; 2006 Nov; 7():498. PubMed ID: 17101042
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Topological classification of RNA structures.
    Bon M; Vernizzi G; Orland H; Zee A
    J Mol Biol; 2008 Jun; 379(4):900-11. PubMed ID: 18485361
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNACluster: An integrated tool for RNA secondary structure comparison and clustering.
    Liu Q; Olman V; Liu H; Ye X; Qiu S; Xu Y
    J Comput Chem; 2008 Jul; 29(9):1517-26. PubMed ID: 18271070
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 4.