347 related articles for article (PubMed ID: 23393030)
21. Comparative performance of transcriptome assembly methods for non-model organisms.
Huang X; Chen XG; Armbruster PA
BMC Genomics; 2016 Jul; 17():523. PubMed ID: 27464550
[TBL] [Abstract][Full Text] [Related]
22. De novo transcriptome assembly: A comprehensive cross-species comparison of short-read RNA-Seq assemblers.
Hölzer M; Marz M
Gigascience; 2019 May; 8(5):. PubMed ID: 31077315
[TBL] [Abstract][Full Text] [Related]
23. RNA-Seq for transcriptome analysis in non-model plants.
Garg R; Jain M
Methods Mol Biol; 2013; 1069():43-58. PubMed ID: 23996307
[TBL] [Abstract][Full Text] [Related]
24. STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow.
Saggese I; Bona E; Conway M; Favero F; Ladetto M; Liò P; Manzini G; Mignone F
BMC Bioinformatics; 2018 Jul; 19(Suppl 7):184. PubMed ID: 30066630
[TBL] [Abstract][Full Text] [Related]
25. Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome.
Visser EA; Wegrzyn JL; Steenkmap ET; Myburg AA; Naidoo S
BMC Genomics; 2015 Dec; 16():1057. PubMed ID: 26652261
[TBL] [Abstract][Full Text] [Related]
26. How to analyze gene expression using RNA-sequencing data.
Ramsköld D; Kavak E; Sandberg R
Methods Mol Biol; 2012; 802():259-74. PubMed ID: 22130886
[TBL] [Abstract][Full Text] [Related]
27. Evaluation of de novo transcriptome assemblies from RNA-Seq data.
Li B; Fillmore N; Bai Y; Collins M; Thomson JA; Stewart R; Dewey CN
Genome Biol; 2014 Dec; 15(12):553. PubMed ID: 25608678
[TBL] [Abstract][Full Text] [Related]
28. A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-Seq data.
Sze SH; Tarone AM
BMC Genomics; 2014; 15 Suppl 5(Suppl 5):S6. PubMed ID: 25082000
[TBL] [Abstract][Full Text] [Related]
29. Designing a transcriptome next-generation sequencing project for a nonmodel plant species.
Strickler SR; Bombarely A; Mueller LA
Am J Bot; 2012 Feb; 99(2):257-66. PubMed ID: 22268224
[TBL] [Abstract][Full Text] [Related]
30. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
Mbandi SK; Hesse U; van Heusden P; Christoffels A
BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
[TBL] [Abstract][Full Text] [Related]
31. TransComb: genome-guided transcriptome assembly via combing junctions in splicing graphs.
Liu J; Yu T; Jiang T; Li G
Genome Biol; 2016 Oct; 17(1):213. PubMed ID: 27760567
[TBL] [Abstract][Full Text] [Related]
32. A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.
Sze SH; Parrott JJ; Tarone AM
BMC Genomics; 2017 Dec; 18(Suppl 10):895. PubMed ID: 29244008
[TBL] [Abstract][Full Text] [Related]
33. SATRAP: SOLiD Assembler TRAnslation Program.
Campagna D; Gasparini F; Franchi N; Manni L; Telatin A; Vitulo N; Ballarin L; Valle G
PLoS One; 2015; 10(9):e0137436. PubMed ID: 26368549
[TBL] [Abstract][Full Text] [Related]
34. Semantic Assembly and Annotation of Draft RNAseq Transcripts without a Reference Genome.
Ptitsyn A; Temanni R; Bouchard C; Anderson PA
PLoS One; 2015; 10(9):e0138006. PubMed ID: 26393794
[TBL] [Abstract][Full Text] [Related]
35. Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data.
Livernois A; Hardy K; Domaschenz R; Papanicolaou A; Georges A; Sarre SD; Rao S; Ezaz T; Deakin JE
Immunogenetics; 2016 Oct; 68(9):719-31. PubMed ID: 27255409
[TBL] [Abstract][Full Text] [Related]
36. Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut.
Sadat-Hosseini M; Bakhtiarizadeh MR; Boroomand N; Tohidfar M; Vahdati K
PLoS One; 2020; 15(4):e0232005. PubMed ID: 32343733
[TBL] [Abstract][Full Text] [Related]
37. De Novo Transcriptome Assembly in Polyploid Species.
Gutierrez-Gonzalez JJ; Garvin DF
Methods Mol Biol; 2017; 1536():209-221. PubMed ID: 28132153
[TBL] [Abstract][Full Text] [Related]
38. DETECTION OF BACTERIAL SMALL TRANSCRIPTS FROM RNA-SEQ DATA: A COMPARATIVE ASSESSMENT.
Peña-Castillo L; Grüell M; Mulligan ME; Lang AS
Pac Symp Biocomput; 2016; 21():456-67. PubMed ID: 26776209
[TBL] [Abstract][Full Text] [Related]
39. Transcriptome analysis using RNA-Seq.
Hoeijmakers WA; Bártfai R; Stunnenberg HG
Methods Mol Biol; 2013; 923():221-39. PubMed ID: 22990781
[TBL] [Abstract][Full Text] [Related]
40. ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs.
Westrin KJ; Kretzschmar WW; Emanuelsson O
BMC Bioinformatics; 2024 Feb; 25(1):54. PubMed ID: 38302873
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]