BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

153 related articles for article (PubMed ID: 23396121)

  • 1. RNA-eXpress annotates novel transcript features in RNA-seq data.
    Forster SC; Finkel AM; Gould JA; Hertzog PJ
    Bioinformatics; 2013 Mar; 29(6):810-2. PubMed ID: 23396121
    [TBL] [Abstract][Full Text] [Related]  

  • 2. CLASS: constrained transcript assembly of RNA-seq reads.
    Song L; Florea L
    BMC Bioinformatics; 2013; 14 Suppl 5(Suppl 5):S14. PubMed ID: 23734605
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome.
    Philippe N; Bou Samra E; Boureux A; Mancheron A; Rufflé F; Bai Q; De Vos J; Rivals E; Commes T
    Nucleic Acids Res; 2014 Mar; 42(5):2820-32. PubMed ID: 24357408
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Grape RNA-Seq analysis pipeline environment.
    Knowles DG; Röder M; Merkel A; Guigó R
    Bioinformatics; 2013 Mar; 29(5):614-21. PubMed ID: 23329413
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CIDANE: comprehensive isoform discovery and abundance estimation.
    Canzar S; Andreotti S; Weese D; Reinert K; Klau GW
    Genome Biol; 2016 Jan; 17():16. PubMed ID: 26831908
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Transcript mapping based on dRNA-seq data.
    Bischler T; Kopf M; Voß B
    BMC Bioinformatics; 2014 Apr; 15():122. PubMed ID: 24780064
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms.
    Dao P; Numanagić I; Lin YY; Hach F; Karakoc E; Donmez N; Collins C; Eichler EE; Sahinalp SC
    Bioinformatics; 2014 Mar; 30(5):644-51. PubMed ID: 24130305
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 9. RES-Scanner: a software package for genome-wide identification of RNA-editing sites.
    Wang Z; Lian J; Li Q; Zhang P; Zhou Y; Zhan X; Zhang G
    Gigascience; 2016 Aug; 5(1):37. PubMed ID: 27538485
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Updating RNA-Seq analyses after re-annotation.
    Roberts A; Schaeffer L; Pachter L
    Bioinformatics; 2013 Jul; 29(13):1631-7. PubMed ID: 23677943
    [TBL] [Abstract][Full Text] [Related]  

  • 11. mmannot: How to improve small-RNA annotation?
    Zytnicki M; Gaspin C
    PLoS One; 2020; 15(5):e0231738. PubMed ID: 32463818
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown.
    Pertea M; Kim D; Pertea GM; Leek JT; Salzberg SL
    Nat Protoc; 2016 Sep; 11(9):1650-67. PubMed ID: 27560171
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Computational discovery of human coding and non-coding transcripts with conserved splice sites.
    Rose D; Hiller M; Schutt K; Hackermüller J; Backofen R; Stadler PF
    Bioinformatics; 2011 Jul; 27(14):1894-900. PubMed ID: 21622663
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring bona fide transfrags in RNA-Seq derived-transcriptome assemblies of non-model organisms.
    Mbandi SK; Hesse U; van Heusden P; Christoffels A
    BMC Bioinformatics; 2015 Feb; 16(1):58. PubMed ID: 25880035
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.
    Seok J; Xu W; Jiang H; Davis RW; Xiao W
    PLoS One; 2012; 7(2):e31440. PubMed ID: 22312447
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Transcriptator: An Automated Computational Pipeline to Annotate Assembled Reads and Identify Non Coding RNA.
    Tripathi KP; Evangelista D; Zuccaro A; Guarracino MR
    PLoS One; 2015; 10(11):e0140268. PubMed ID: 26581084
    [TBL] [Abstract][Full Text] [Related]  

  • 17. EasyCluster2: an improved tool for clustering and assembling long transcriptome reads.
    Bevilacqua V; Pietroleonardo N; Giannino E; Stroppa F; Simone D; Pesole G; Picardi E
    BMC Bioinformatics; 2014; 15 Suppl 15(Suppl 15):S7. PubMed ID: 25474441
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iMapSplice: Alleviating reference bias through personalized RNA-seq alignment.
    Liu X; MacLeod JN; Liu J
    PLoS One; 2018; 13(8):e0201554. PubMed ID: 30096157
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Transcriptome profile of a bovine respiratory disease pathogen: Mannheimia haemolytica PHL213.
    Reddy JS; Kumar R; Watt JM; Lawrence ML; Burgess SC; Nanduri B
    BMC Bioinformatics; 2012; 13 Suppl 15(Suppl 15):S4. PubMed ID: 23046475
    [TBL] [Abstract][Full Text] [Related]  

  • 20. RNA Sequencing in B-Cell Lymphomas.
    Huang DW; Dawood M; Johnson CA; Schmitz R
    Methods Mol Biol; 2019; 1956():283-303. PubMed ID: 30779040
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.