863 related articles for article (PubMed ID: 23398735)
1. MultiAlign: a multiple LC-MS analysis tool for targeted omics analysis.
LaMarche BL; Crowell KL; Jaitly N; Petyuk VA; Shah AR; Polpitiya AD; Sandoval JD; Kiebel GR; Monroe ME; Callister SJ; Metz TO; Anderson GA; Smith RD
BMC Bioinformatics; 2013 Feb; 14():49. PubMed ID: 23398735
[TBL] [Abstract][Full Text] [Related]
2. Enhanced peptide quantification using spectral count clustering and cluster abundance.
Lee S; Kwon MS; Lee HJ; Paik YK; Tang H; Lee JK; Park T
BMC Bioinformatics; 2011 Oct; 12():423. PubMed ID: 22034872
[TBL] [Abstract][Full Text] [Related]
3. The APEX Quantitative Proteomics Tool: generating protein quantitation estimates from LC-MS/MS proteomics results.
Braisted JC; Kuntumalla S; Vogel C; Marcotte EM; Rodrigues AR; Wang R; Huang ST; Ferlanti ES; Saeed AI; Fleischmann RD; Peterson SN; Pieper R
BMC Bioinformatics; 2008 Dec; 9():529. PubMed ID: 19068132
[TBL] [Abstract][Full Text] [Related]
4. Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.
Brusniak MY; Bodenmiller B; Campbell D; Cooke K; Eddes J; Garbutt A; Lau H; Letarte S; Mueller LN; Sharma V; Vitek O; Zhang N; Aebersold R; Watts JD
BMC Bioinformatics; 2008 Dec; 9():542. PubMed ID: 19087345
[TBL] [Abstract][Full Text] [Related]
5. Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data.
Jaitly N; Mayampurath A; Littlefield K; Adkins JN; Anderson GA; Smith RD
BMC Bioinformatics; 2009 Mar; 10():87. PubMed ID: 19292916
[TBL] [Abstract][Full Text] [Related]
6. A simple peak detection and label-free quantitation algorithm for chromatography-mass spectrometry.
Aoshima K; Takahashi K; Ikawa M; Kimura T; Fukuda M; Tanaka S; Parry HE; Fujita Y; Yoshizawa AC; Utsunomiya S; Kajihara S; Tanaka K; Oda Y
BMC Bioinformatics; 2014 Nov; 15(1):376. PubMed ID: 25420746
[TBL] [Abstract][Full Text] [Related]
7. Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets.
Wang J; Lam H
Bioinformatics; 2013 Oct; 29(19):2469-76. PubMed ID: 23904508
[TBL] [Abstract][Full Text] [Related]
8. Shape-based feature matching improves protein identification via LC-MS and tandem MS.
Noy K; Towfic F; Wittenberg GM; Fasulo D
J Comput Biol; 2011 Apr; 18(4):547-57. PubMed ID: 21417940
[TBL] [Abstract][Full Text] [Related]
9. Advanced liquid chromatography-mass spectrometry enables merging widely targeted metabolomics and proteomics.
Liu W; Song Q; Cao Y; Zhao Y; Huo H; Wang Y; Song Y; Li J; Tu P
Anal Chim Acta; 2019 Sep; 1069():89-97. PubMed ID: 31084745
[TBL] [Abstract][Full Text] [Related]
10. SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling.
Mueller LN; Rinner O; Schmidt A; Letarte S; Bodenmiller B; Brusniak MY; Vitek O; Aebersold R; Müller M
Proteomics; 2007 Oct; 7(19):3470-80. PubMed ID: 17726677
[TBL] [Abstract][Full Text] [Related]
11. [Application of peptide retention time in proteome research].
Shao C; Gao Y
Se Pu; 2010 Feb; 28(2):128-34. PubMed ID: 20556949
[TBL] [Abstract][Full Text] [Related]
12. Incorporating peak grouping information for alignment of multiple liquid chromatography-mass spectrometry datasets.
Wandy J; Daly R; Breitling R; Rogers S
Bioinformatics; 2015 Jun; 31(12):1999-2006. PubMed ID: 25649621
[TBL] [Abstract][Full Text] [Related]
13. xMSanalyzer: automated pipeline for improved feature detection and downstream analysis of large-scale, non-targeted metabolomics data.
Uppal K; Soltow QA; Strobel FH; Pittard WS; Gernert KM; Yu T; Jones DP
BMC Bioinformatics; 2013 Jan; 14():15. PubMed ID: 23323971
[TBL] [Abstract][Full Text] [Related]
14. Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.
Dworzanski JP; Snyder AP; Chen R; Zhang H; Wishart D; Li L
Anal Chem; 2004 Apr; 76(8):2355-66. PubMed ID: 15080748
[TBL] [Abstract][Full Text] [Related]
15. iPhos: a toolkit to streamline the alkaline phosphatase-assisted comprehensive LC-MS phosphoproteome investigation.
Yang TH; Chang HT; Hsiao ES; Sun JL; Wang CC; Wu HY; Liao PC; Wu WS
BMC Bioinformatics; 2014; 15 Suppl 16(Suppl 16):S10. PubMed ID: 25521246
[TBL] [Abstract][Full Text] [Related]
16. YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research.
Colangelo CM; Shifman M; Cheung KH; Stone KL; Carriero NJ; Gulcicek EE; Lam TT; Wu T; Bjornson RD; Bruce C; Nairn AC; Rinehart J; Miller PL; Williams KR
Genomics Proteomics Bioinformatics; 2015 Feb; 13(1):25-35. PubMed ID: 25712262
[TBL] [Abstract][Full Text] [Related]
17. MaxQuant Software for Ion Mobility Enhanced Shotgun Proteomics.
Prianichnikov N; Koch H; Koch S; Lubeck M; Heilig R; Brehmer S; Fischer R; Cox J
Mol Cell Proteomics; 2020 Jun; 19(6):1058-1069. PubMed ID: 32156793
[TBL] [Abstract][Full Text] [Related]
18. KYSS: mass spectrometry data quality assessment for protein analysis and large-scale proteomics.
Such-Sanmartín G; Sidoli S; Ventura-Espejo E; Jensen ON
Biochem Biophys Res Commun; 2014 Mar; 445(4):702-7. PubMed ID: 24480439
[TBL] [Abstract][Full Text] [Related]
19. MASIC: a software program for fast quantitation and flexible visualization of chromatographic profiles from detected LC-MS(/MS) features.
Monroe ME; Shaw JL; Daly DS; Adkins JN; Smith RD
Comput Biol Chem; 2008 Jun; 32(3):215-7. PubMed ID: 18440872
[TBL] [Abstract][Full Text] [Related]
20. MS-BID: a Java package for label-free LC-MS-based comparative proteomic analysis.
Hwang D; Zhang N; Lee H; Yi E; Zhang H; Lee IY; Hood L; Aebersold R
Bioinformatics; 2008 Nov; 24(22):2641-2. PubMed ID: 18805798
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
