262 related articles for article (PubMed ID: 23407591)
1. VIROME: a standard operating procedure for analysis of viral metagenome sequences.
Wommack KE; Bhavsar J; Polson SW; Chen J; Dumas M; Srinivasiah S; Furman M; Jamindar S; Nasko DJ
Stand Genomic Sci; 2012 Jul; 6(3):427-39. PubMed ID: 23407591
[TBL] [Abstract][Full Text] [Related]
2. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
3. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis.
Roux S; Tournayre J; Mahul A; Debroas D; Enault F
BMC Bioinformatics; 2014 Mar; 15():76. PubMed ID: 24646187
[TBL] [Abstract][Full Text] [Related]
4. CheckV assesses the quality and completeness of metagenome-assembled viral genomes.
Nayfach S; Camargo AP; Schulz F; Eloe-Fadrosh E; Roux S; Kyrpides NC
Nat Biotechnol; 2021 May; 39(5):578-585. PubMed ID: 33349699
[TBL] [Abstract][Full Text] [Related]
5. Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning.
Steward GF; Preston CM
Virol J; 2011 Jun; 8():287. PubMed ID: 21651822
[TBL] [Abstract][Full Text] [Related]
6. TheViral MetaGenome Annotation Pipeline(VMGAP):an automated tool for the functional annotation of viral Metagenomic shotgun sequencing data.
Lorenzi HA; Hoover J; Inman J; Safford T; Murphy S; Kagan L; Williamson SJ
Stand Genomic Sci; 2011 Jul; 4(3):418-29. PubMed ID: 21886867
[TBL] [Abstract][Full Text] [Related]
7. Viral metagenomes of Lake Soyang, the largest freshwater lake in South Korea.
Moon K; Kim S; Kang I; Cho JC
Sci Data; 2020 Oct; 7(1):349. PubMed ID: 33051444
[TBL] [Abstract][Full Text] [Related]
8. Exploration of noncoding sequences in metagenomes.
Tobar-Tosse F; Rodríguez AC; Vélez PE; Zambrano MM; Moreno PA
PLoS One; 2013; 8(3):e59488. PubMed ID: 23536879
[TBL] [Abstract][Full Text] [Related]
9. Elimination of Foreign Sequences in Eukaryotic Viral Reference Genomes Improves the Accuracy of Virome Analysis.
Chen J; Sun Y; Yan X; Ren Z; Wang G; Liu Y; Zhao Z; Yi L; Tu C; He B
mSystems; 2022 Dec; 7(6):e0090722. PubMed ID: 36286492
[TBL] [Abstract][Full Text] [Related]
10. A library preparation optimized for metagenomics of RNA viruses.
Gil P; Dupuy V; Koual R; Exbrayat A; Loire E; Fall AG; Gimonneau G; Biteye B; Talla Seck M; Rakotoarivony I; Marie A; Frances B; Lambert G; Reveillaud J; Balenghien T; Garros C; Albina E; Eloit M; Gutierrez S
Mol Ecol Resour; 2021 Aug; 21(6):1788-1807. PubMed ID: 33713395
[TBL] [Abstract][Full Text] [Related]
11. Viral metagenome analysis to guide human pathogen monitoring in environmental samples.
Bibby K; Viau E; Peccia J
Lett Appl Microbiol; 2011 Apr; 52(4):386-92. PubMed ID: 21272046
[TBL] [Abstract][Full Text] [Related]
12. Discovering viral genomes in human metagenomic data by predicting unknown protein families.
Barrientos-Somarribas M; Messina DN; Pou C; Lysholm F; Bjerkner A; Allander T; Andersson B; Sonnhammer ELL
Sci Rep; 2018 Jan; 8(1):28. PubMed ID: 29311716
[TBL] [Abstract][Full Text] [Related]
13. The National Ecological Observatory Network's soil metagenomes: assembly and basic analysis.
Werbin ZR; Hackos B; Lopez-Nava J; Dietze MC; Bhatnagar JM
F1000Res; 2021; 10():299. PubMed ID: 35707452
[TBL] [Abstract][Full Text] [Related]
14. From Whole Genome Shotgun Sequencing to Viral Community Profiling: The ViromeScan Tool.
Rampelli S; Turroni S; Candela M
Methods Mol Biol; 2024; 2732():23-28. PubMed ID: 38060115
[TBL] [Abstract][Full Text] [Related]
15. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
Bose T; Haque MM; Reddy C; Mande SS
PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
[TBL] [Abstract][Full Text] [Related]
16. Diversity in a Polymicrobial Community Revealed by Analysis of Viromes, Endolysins and CRISPR Spacers.
Davison M; Treangen TJ; Koren S; Pop M; Bhaya D
PLoS One; 2016; 11(9):e0160574. PubMed ID: 27611571
[TBL] [Abstract][Full Text] [Related]
17. Comparison of methods for library construction and short read annotation of shellfish viral metagenomes.
Wei HY; Huang S; Wang JY; Gao F; Jiang JZ
Genes Genomics; 2018 Mar; 40(3):281-288. PubMed ID: 29892802
[TBL] [Abstract][Full Text] [Related]
18. MG-Digger: An Automated Pipeline to Search for Giant Virus-Related Sequences in Metagenomes.
Verneau J; Levasseur A; Raoult D; La Scola B; Colson P
Front Microbiol; 2016; 7():428. PubMed ID: 27065984
[TBL] [Abstract][Full Text] [Related]
19. Tracing mother-infant transmission of bacteriophages by means of a novel analytical tool for shotgun metagenomic datasets: METAnnotatorX.
Milani C; Casey E; Lugli GA; Moore R; Kaczorowska J; Feehily C; Mangifesta M; Mancabelli L; Duranti S; Turroni F; Bottacini F; Mahony J; Cotter PD; McAuliffe FM; van Sinderen D; Ventura M
Microbiome; 2018 Aug; 6(1):145. PubMed ID: 30126456
[TBL] [Abstract][Full Text] [Related]
20. MetCap: a bioinformatics probe design pipeline for large-scale targeted metagenomics.
Kushwaha SK; Manoharan L; Meerupati T; Hedlund K; Ahrén D
BMC Bioinformatics; 2015 Feb; 16(1):65. PubMed ID: 25880302
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]